PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.T3S5X

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bHLH

Protein Properties

Length: 414aa MW: 46521.4 Da PI: 8.2941

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.T3S5X	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.8	1.5e-11	346	391	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+ l Pk+ +k s ae+L +Ave+Ik+Lq Aradu.T3S5X 346 SIAERVRRTRISERIKKLQGLFPKS----DKQTSTAEMLDLAVEHIKELQ 391 689*******************9....788***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.011	340	390	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-14	342	407	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.24E-10	344	395	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.0E-12	345	399	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.4E-11	346	396	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-8	346	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MSVMYSPVLK YSHGVLRKGH EMISNINHHQ HQDQNHHHQQ QQQQNSRLLR YRSAPSSFLE 60 NLVDINNGGA SVNEDPPLGH GCYHHIPSTS SSSEAMFSKP IQSNNGWSRR DSEPVQVQEE 120 YGGSNNKPTV LKEENGNSSF LKEQNGYPYW TQQIQSLPTN NNGYDGSFGV VNSVNSDHST 180 QSEMGVRSCS NLIRQKSSPA GFFSSENALR EVERFRSNDV SSNRSSSCLK RMPQIAEYEN 240 ESHEGNLVND NGSSKYYVPS FTGEVWDASS FNSQKAASAD EIMFSASTAL ESQDSDFCSQ 300 NLGLIHHLSL LSSSTKMGSM EKFLQLQGTV PCKIRAKRGF ATHPRSIAER VRRTRISERI 360 KKLQGLFPKS DKQTSTAEML DLAVEHIKEL QEQVKMLTNI RSKCRCTNTQ KQYS

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MSVMYSPVLK YSHGVLRKGH EMISNINHHQ HQDQNHHHQQ QQQQNSRLLR YRSAPSSFLE  60
NLVDINNGGA SVNEDPPLGH GCYHHIPSTS SSSEAMFSKP IQSNNGWSRR DSEPVQVQEE  120
YGGSNNKPTV LKEENGNSSF LKEQNGYPYW TQQIQSLPTN NNGYDGSFGV VNSVNSDHST  180
QSEMGVRSCS NLIRQKSSPA GFFSSENALR EVERFRSNDV SSNRSSSCLK RMPQIAEYEN  240
ESHEGNLVND NGSSKYYVPS FTGEVWDASS FNSQKAASAD EIMFSASTAL ESQDSDFCSQ  300
NLGLIHHLSL LSSSTKMGSM EKFLQLQGTV PCKIRAKRGF ATHPRSIAER VRRTRISERI  360
KKLQGLFPKS DKQTSTAEML DLAVEHIKEL QEQVKMLTNI RSKCRCTNTQ KQYS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.T3S5X

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015936790.1	0.0	transcription factor bHLH130
TrEMBL	A0A445BZK7	0.0	A0A445BZK7_ARAHY; Uncharacterized protein
STRING	GLYMA08G16190.1	1e-147	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4005	33	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	3e-44	bHLH family protein