PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.RT17Y | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 233aa MW: 26850.2 Da PI: 5.4147 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 70.1 | 5.3e-22 | 136 | 227 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 +fYn+Y+ GF +rk++ + ++g+i++r++vC+keg r+ + + ++++r+ r+ rt+C a+l+vk+++ g+w+v+ +++ HnH+l+p Aradu.RT17Y 136 QFYNAYSCWHGFVMRKDNAVRD-NQGRIISRQLVCNKEGWRNMRYLDmDDRSRKARSLMRTKCPARLRVKLDYgCGRWNVSCFVESHNHDLTP 227 6****************99988.8888***************999886788999*******************99***************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.4E-20 | 136 | 227 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
FTSDREQAVA GGRSLPSPFL SRLQITYGCL INIVSLQKFS SLLIGFQALI VIKLYDVPRG 60 KIMSRNEDDV KNNSDNDLGD DFDYQPNAED DAEEDDVDSL DSTSKSKEVC GVKRIADLMV 120 EDIWNLEFRT EDEACQFYNA YSCWHGFVMR KDNAVRDNQG RIISRQLVCN KEGWRNMRYL 180 DMDDRSRKAR SLMRTKCPAR LRVKLDYGCG RWNVSCFVES HNHDLTPPQF AHL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.RT17Y |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ637177 | 0.0 | HQ637177.1 Arachis hypogaea clone AHF-303L13 NBS-LRR gene cluster, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015972922.1 | 1e-124 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A445D4J3 | 1e-110 | A0A445D4J3_ARAHY; Uncharacterized protein | ||||
TrEMBL | A0A445D7E1 | 1e-112 | A0A445D7E1_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9653 | 6 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 6e-19 | FAR1-related sequence 5 |