PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.QH2NX
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 377aa    MW: 44032.2 Da    PI: 7.2878
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.QH2NXgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR147.46.5e-1596175178
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwev 78 
                  +fY+ Y+k+ GF vrk++ +++ +n+ +t+++f C   g+r++  ++  ++++ ++++etr+gC a+++v+ +  +g+w  
  Aradu.QH2NX  96 SFYQLYSKMNGFAVRKNRIRRNVKNE-VTQQQFICFWDGFRDTGPENdsHRRKCEPKPETRCGCLAEMRVHVHVeSGRWIT 175
                  5********************96665.***************998883344444599**************9988899965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.1E-1296175IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.052307343IPR007527Zinc finger, SWIM-type
SMARTSM005750.007318345IPR006564Zinc finger, PMZ-type
PfamPF044341.1E-4320342IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MDHFVSSLFL QDENVRADND PLAWEDIEGC RVSENYAEEV QGVDSNVDKF FNDTFYDNWD  60
ERAFDGIDEL GYMNLKEITA SEVRLLHFRD QTVAFSFYQL YSKMNGFAVR KNRIRRNVKN  120
EVTQQQFICF WDGFRDTGPE NDSHRRKCEP KPETRCGCLA EMRVHVHVES GRWITSRKMW  180
ATAYIHGHFF GGFRTTSRCE RLHSMLSKFV HSRHNLRGFI EQILRCICQM RLREAQSELA  240
SVVGDLVLQS PLHALERSAA NTLTREIFML FRPMLTRACT LKVCSCTLTP SCEIYTLSKS  300
GNPNKEWNVS HYQDRSIFKC SCFRMESLGI PCDHIVAVLV HLDAKEIPKS LLIDRWSKNA  360
RLKVWEFMEN GPFCWES
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.QH2NX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015939157.11e-143protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025616602.11e-143protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445AJY70.0A0A445AJY7_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3613639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-15FAR1-related sequence 5