PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.PBW5F

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bHLH

Protein Properties

Length: 451aa MW: 49209.6 Da PI: 6.7361

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.PBW5F	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.3	0.00031	356	380	28	54
CC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 28 Pk.askapskKlsKaeiLekAveYIksL 54 P+ + p+ K + a++L +A+eYIk L Aradu.PBW5F 356 PSpL---PAFKTDTASVLSEAIEYIKFL 380 5533...77899**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	3.2E-6	357	388	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.54E-6	361	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MAEDQFQASG NWWENPAIRN NWQPHHQQQD ESDHMMKPTR VSMDSSGGAG GGSSSVVFHD 60 PQKLQPPDSA TAATSSTDPN LHFMALGLSS PPIDWNQQPS FLRGEKGGEN SFRSMLQEEG 120 GGGGGMGLSP QQVHQWRSPE TEFKNNRGFC LEQNQFSPQY SSGDSTVTSQ QGFHHQNMDH 180 SAVLYGSPSS ILQGLLGPDH HHHHHQQQAN HNFSYPTSNY GLSSSSSNDF VPSSSSSNWS 240 NNNNNNNNNN KVPQFLRGSP PKQLSNSSSS PITTTNTSLH FTNNAPFWNA AAAAASDPKD 300 VRSTTFFPNS LQPPFFTNPS FDVQSKNMSE MRDSGAVVKK SGSEPTPKRP RNETTPSPLP 360 AFKTDTASVL SEAIEYIKFL HEQVTVLSTP YMKSGAPIQI QQGSGKSKEG EGPKQDLRSR 420 GLCLVPVSST FPMTHETTVD FWTPTFGGGS R

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MAEDQFQASG NWWENPAIRN NWQPHHQQQD ESDHMMKPTR VSMDSSGGAG GGSSSVVFHD  60
PQKLQPPDSA TAATSSTDPN LHFMALGLSS PPIDWNQQPS FLRGEKGGEN SFRSMLQEEG  120
GGGGGMGLSP QQVHQWRSPE TEFKNNRGFC LEQNQFSPQY SSGDSTVTSQ QGFHHQNMDH  180
SAVLYGSPSS ILQGLLGPDH HHHHHQQQAN HNFSYPTSNY GLSSSSSNDF VPSSSSSNWS  240
NNNNNNNNNN KVPQFLRGSP PKQLSNSSSS PITTTNTSLH FTNNAPFWNA AAAAASDPKD  300
VRSTTFFPNS LQPPFFTNPS FDVQSKNMSE MRDSGAVVKK SGSEPTPKRP RNETTPSPLP  360
AFKTDTASVL SEAIEYIKFL HEQVTVLSTP YMKSGAPIQI QQGSGKSKEG EGPKQDLRSR  420
GLCLVPVSST FPMTHETTVD FWTPTFGGGS R

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.PBW5F

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025614750.1	0.0	transcription factor bHLH123-like isoform X1
TrEMBL	A0A445BY80	0.0	A0A445BY80_ARAHY; Uncharacterized protein
STRING	XP_007149667.1	1e-151	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1118	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	4e-47	bHLH family protein