PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.L9WUK | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | HSF | ||||||||
Protein Properties | Length: 361aa MW: 41197.8 Da PI: 7.4211 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.4 | 3.1e-35 | 26 | 118 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+ye+++d+++++++sw e++++fvv+ + +fa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ Fkkg+k+ll++i+ Aradu.L9WUK 26 FLTKTYELVDDAATDHIVSWGEDETTFVVWRPPDFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDFFKKGEKHLLCEIH 113 9*****************************************************************99.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k++ Aradu.L9WUK 114 RRKTS 118 **986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.0E-37 | 17 | 110 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.3E-58 | 22 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 6.53E-33 | 23 | 115 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 8.6E-31 | 26 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.3E-19 | 26 | 49 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.3E-19 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 65 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.3E-19 | 77 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MGIVLDSNCE SIVVSLETQK AVPAPFLTKT YELVDDAATD HIVSWGEDET TFVVWRPPDF 60 ARDLLPNYFK HNNFSSFVRQ LNTYGFRKIV PDRWEFANDF FKKGEKHLLC EIHRRKTSHT 120 HPHHQQLPSS INHNQNHFNN NIHLLPSATT FYHPFHQHNN RVSISPDSDE LPTWCDSDII 180 SNTTTTTTTT ASSSTLTALS QDNERLRRSN NILMSELAHM KKLYNDIIYF VQNHVKPVAP 240 SNTYSSSFIL PQHQPSSSSA TTTNCNAFSM LHKQVQQQQQ HHHDYLNSPT NTSRSSITMI 300 EDQSSKSCKT KLFGVSLQSN KKRVHPDYGF SHAFAETNNK ARLVLGNDND DYLGLNLMPP 360 S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-20 | 22 | 118 | 17 | 123 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.L9WUK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015972580.1 | 0.0 | heat stress transcription factor B-4 | ||||
Swissprot | Q9C635 | 1e-113 | HSFB4_ARATH; Heat stress transcription factor B-4 | ||||
TrEMBL | A0A445CXW6 | 1e-169 | A0A445CXW6_ARAHY; Uncharacterized protein | ||||
STRING | AES73309 | 1e-150 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1612 | 33 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 1e-108 | heat shock transcription factor B4 |