PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.KU6WK | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB | ||||||||
Protein Properties | Length: 385aa MW: 41904.6 Da PI: 6.1446 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.5 | 5.6e-17 | 54 | 99 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v ++G ++W++Iar + gR++k+c++rw + Aradu.KU6WK 54 KGPWSPEEDTILSRLVSKFGARNWSLIARGIA-GRSGKSCRLRWCNQ 99 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 57.9 | 2.3e-18 | 106 | 150 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd ++v a++ +G++ W++Iar ++ gRt++ +k++w++ Aradu.KU6WK 106 RKPFTDEEDRIIVAAHAIHGNK-WAAIARLLP-GRTDNAIKNHWNST 150 789*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.091 | 49 | 104 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.76E-30 | 51 | 147 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.8E-15 | 53 | 102 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-16 | 54 | 99 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-25 | 55 | 107 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.73E-14 | 56 | 98 | No hit | No description |
SMART | SM00717 | 2.2E-17 | 105 | 153 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 22.171 | 105 | 155 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.3E-15 | 106 | 150 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.54E-13 | 108 | 151 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 108 | 154 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MDPPEETATT TLDHEGASTG ADAAADTGSG DEGPTEIAEA GGSGGGGSNR DRVKGPWSPE 60 EDTILSRLVS KFGARNWSLI ARGIAGRSGK SCRLRWCNQL DPAVKRKPFT DEEDRIIVAA 120 HAIHGNKWAA IARLLPGRTD NAIKNHWNST LRRRGVEHDK IKVESSNMVE DVSLDKAKAS 180 SEETLSCDVN SLRSSEGRDV SSAEAMDDKY EEKSRTEGQL YHEVKDPPTL FRPKARISAF 240 SVYHTVDGFQ PSTSTQRQVQ GPILQSSKPD REICKMLEGI YSDQSVPHQC GHGCCGAPNG 300 KKFKSSLLGP EFIEFSEPQS FPSFELAAIA TDISNLAWLK SGLENSSVKM MGETTSRVVS 360 NGSQVHIGHN DNYQLELLIL TGRFC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-40 | 51 | 154 | 4 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00337 | DAP | Transfer from AT3G09230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.KU6WK |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF208659 | 0.0 | KF208659.1 Arachis hypogaea putative R2R3 MYB protein 5 (MYB5) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015950110.1 | 0.0 | transcription factor MYB1 | ||||
Refseq | XP_025653117.1 | 0.0 | transcription factor MYB1 | ||||
Swissprot | Q42575 | 1e-111 | MYB1_ARATH; Transcription factor MYB1 | ||||
TrEMBL | A0A445EB81 | 0.0 | A0A445EB81_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA03G15810.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3986 | 33 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09230.1 | 1e-113 | myb domain protein 1 |
Publications ? help Back to Top | |||
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