PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.KH3XD
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family SBP
Protein Properties Length: 794aa    MW: 89346.9 Da    PI: 6.9942
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.KH3XDgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP116.21.7e-36129205177
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                  +Cqv+gCe+d++e+k yhrrh+vC  +++a++v+++g+ +r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k 
  Aradu.KH3XD 129 CCQVPGCEVDITELKGYHRRHRVCLRCANAATVMLDGEAKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRKP 205
                  6************************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.0E-28124191IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.581127204IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-33128207IPR004333Transcription factor, SBP-box
PfamPF031109.2E-28130204IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MEPLPSLPPP LNNNNNNNNM DDSSSIWDLT YLLDFNLDDL PLDPHQPSQP LDFDPPAAPD  60
PHNIPPPSPL PANDKVRKRD PRLTCSNFLA GRVPCACPEI DAQIENEGLP GKKRVRTASA  120
ARGSPPTVCC QVPGCEVDIT ELKGYHRRHR VCLRCANAAT VMLDGEAKRY CQQCGKFHVL  180
SDFDEGKRSC RRKLERHNNR RRRKPADSRA EAAHEPLPVA QNEDSNNDGE TGKGLDSSNL  240
SCEINEKEVS LDLEDEPVAN LNSAPDMQNI TNDSVMTFLA SGETQVNSGK DASNLSNSPS  300
YCDNKSAYSS LCQTGRISFK LYDWNPAEFP RRLRHQIFQW LASMPVELEG YIRPGCTILT  360
IFIAMPKNMW INLQEDPMYY VRDLVAPGKF LSARGNALIY LNDMFFRIMK DGTSVTKVKV  420
NMQAPRLHYV HPTYFEAGKP LEFVACGSNL MQPKFRLLVS FSGKYLKCEY CVPSPHNWTG  480
NNMSCAFENQ LYKIYVPHTE ETLFGPAFIE VENEAGLSNF IPVLIGDKEI CSEMRTLQQR  540
LDESLHSKQF QSTSGGSICS LCEDFAHRHT SSDLLVDIAW LLKNPTSENF ERMMTASQVQ  600
RYCYLLDFLI CHDSVLILEK ILPKLVIFTE GLKSNIVISR TSDVDVTQLL NCMHLARDVI  660
NQNHQKGRGI VVHSETEGFR IEKTCTQDSL PSVSRIKSQD VLSRTDSKCG IMRSPTSNDE  720
IDRIPLLKRE IIMNMEELPK RSSRRYVGRG FLSSRPAMFV IVSVAVCLAV CVAVLHRGRV  780
SELAVSIRRC LFNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A5e-42130207683squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190202RRKLERHNNRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.KH3XD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3122280.0KF312228.1 Arachis hypogaea squamosa promoter-binding-like protein (SPL7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015958734.10.0squamosa promoter-binding-like protein 7 isoform X1
TrEMBLA0A0K0KCL80.0A0A0K0KCL8_ARAHY; Squamosa promoter-binding-like protein
STRINGGLYMA15G10620.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64703450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.10.0squamosa promoter binding protein-like 7