PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.K82B1
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 278aa    MW: 31533.6 Da    PI: 5.2286
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.K82B1genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.71e-1397147154
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +r++h ++Er+RR+++N+ ++ Lr l+P +   + ++ + a+i   A++Y+k L
  Aradu.K82B1  97 QRMTHIAVERNRRKQMNDYLSLLRNLMPDS---YVQRGDQASIIGGAINYVKVL 147
                  79****************************...9*****************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.5E-1395152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.02E-1295152No hitNo description
PROSITE profilePS5088815.09796147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1696157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-1197147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-9102153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MCLPESERDM ALEAVLYTNN NIQQPLPSSS YAINDTNNKD LDFFNFNNDT GLHYLLSPPP  60
PPPEETETTM DTTSTCSERP KRRRGKTRKN KEEIENQRMT HIAVERNRRK QMNDYLSLLR  120
NLMPDSYVQR GDQASIIGGA INYVKVLEQK LQFLAATTSD EDGGSDHTNN KIGTMPFSEF  180
FGFPQVTGNA DIEVTMVESH ANLKIRSKKK PKQLLKMVSN LQAMRLTILH LNVTTTNNDI  240
VLYSLSVKVE DDCKLESVDE IATAVCQMME NIQHESVE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197108RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.K82B1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015968561.10.0transcription factor bHLH96
SwissprotQ9C7T47e-75BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A445CNL00.0A0A445CNL0_ARAHY; Uncharacterized protein
STRINGGLYMA19G42520.11e-103(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-77bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]