PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.JT48R
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 386aa    MW: 42631.2 Da    PI: 7.3081
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.JT48RgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.71.4e-052793171154
                  HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Aradu.JT48R 279 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEATEYIKFL 317
                  5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.15268317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.54E-6278321No hitNo description
SuperFamilySSF474593.01E-11278334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-9282325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MADDQFRASA NWWDSSRNVV RFESREPQSG SSGLTNNTGN FSWHGVGDDK IMKLPRSSTM  60
ENSMSSSSAG ASSGRSCVVF HERFQQQQNL DMMMGLGLSS QASTDWNQAS FMRAEKASEM  120
LQQNLSAHQE IQFSPQYSNI TSQQVLSSNF QMDSSSSAPL YCNTSMLQGL LGPESNNQPH  180
QGPMSNFPYS TCLNSNNNNN QLHFTNNAPF WNASEPAAVS IKDGRSIFFP SLHQPFSAPK  240
NICEVRESGG SMLKKSENEQ SSKRPRNETP PSPLPAFKVR KEKMGDRITA LQQLVSPFGK  300
TDTASVLSEA TEYIKFLHEQ VTVLSTPYMK SGAQTQHHQN SGKSKEADGP KQDLRSRGLC  360
LVPISSTFPV THEPTVDFWT PTFGGT
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.JT48R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150398e-38AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015953965.10.0transcription factor bHLH123-like
RefseqXP_025687958.10.0transcription factor bHLH123
TrEMBLA0A445DZ190.0A0A445DZ19_ARAHY; Uncharacterized protein
STRINGGLYMA12G34490.11e-137(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.12e-61bHLH family protein