PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.JK93I
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 465aa    MW: 53277.5 Da    PI: 6.253
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.JK93IgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.15.9e-0874115143
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkree 43 
                  +fYn+Y+   GF +rk+   +  ++g+i++r++vC+keg r+ 
  Aradu.JK93I  74 QFYNAYSCWHGFVMRKDDVVRD-NQGSIISRQLVCNKEGWRNV 115
                  6****************99998.8899************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-574115IPR004330FAR1 DNA binding domain
SuperFamilySSF577561.21E-6267299IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.105.3E-4276295IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.614281296IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MFINEDDVKN DSDNDLGDDF DYQPIAEDDA EDDDVDSLDS TSKSEEVCGV KRIADLMVED  60
IWNLEFRTED EACQFYNAYS CWHGFVMRKD DVVRDNQGSI ISRQLVCNKE GWRNVRYLDL  120
DDRLVDEIVI HILLYLALKE YRNNELIADF KSQFSEPVMI TSLEVCEKSA SCYFTQNIFK  180
EIRNKIQRAG ALNIKVLSTT LDKVEFSVTA LGDPAKDRRV EVDRDFDEVQ SEIVNLVIRL  240
QSRKQGKSTP NVNVEGINDP FVVKSKGAPS KRSSWRKKRA CSNCHKYGHY YKRCPDLMQH  300
SVEGKPRDRS DGNASAKDSG FSPERFANCS RSISVKSEHH SGPKTKPFKK GGTRKFTVTG  360
MRNRKGKDNS FDERSLHESS ESIDIASTNG FFNKNLYSLT QQVKESQQDK RHSFTNYECV  420
NDVMDDKCDT RHVHFDVRDL LPSSLPCGNK QGSYMALFVS MHRTL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.JK93I
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371771e-175HQ637177.1 Arachis hypogaea clone AHF-303L13 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025703006.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445DUY50.0A0A445DUY5_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9653634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.12e-09FAR1 family protein