PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.J1VPN
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family SBP
Protein Properties Length: 425aa    MW: 47041.1 Da    PI: 7.1338
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.J1VPNgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.72.5e-41176252278
                  -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  CqvegC  dls+ak+yhr+h+vCe hsk+p vl++g e+rfCqqCsrfh lsefD++krsCrrrL++hn+rrrk+q+
  Aradu.J1VPN 176 CQVEGCGLDLSSAKDYHRKHRVCESHSKSPRVLIAGFERRFCQQCSRFHGLSEFDDKKRSCRRRLSDHNARRRKPQP 252
                  **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.5E-33168237IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.436173250IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.02E-38174255IPR004333Transcription factor, SBP-box
PfamPF031101.8E-31176249IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MEWNAKSLGQ WDWENLYSFN TKPTESSKLQ PTDWSMEADG EINVGLIYPS GGSACSGSEL  60
IHASSRSSKS ASMNSSSNGD SKASTTMFTF ERSQDDSTGK KELSKEEPVE NSPAPEPSSA  120
SGEPLLTLKL GKRLYFEDVC AGSDSKKPSS IDVPISSSNT GKKCKANSQN LQHPSCQVEG  180
CGLDLSSAKD YHRKHRVCES HSKSPRVLIA GFERRFCQQC SRFHGLSEFD DKKRSCRRRL  240
SDHNARRRKP QPEAVQLNTS ALSSSPYDAR QLMNPFVYSR AATNIGWQDI QNSRLPQTKD  300
FLMRPAKAFD KIPSIVTMLS DDFSDLASKG MATSGKEDPI SSSDPNATQD VSRALSLLST  360
NSWSTYAMTP RFPLPSSQYS HLDQQPANPN MCIPFSDCDN SNRFQEFQMF SAPPYDSGYP  420
CNQLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-261762491184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231248KKRSCRRRLSDHNARRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.J1VPN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3122240.0KF312224.1 Arachis hypogaea squamosa promoter-binding-like protein (SPL2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015958391.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_015958392.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_020995355.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_020995356.10.0squamosa promoter-binding-like protein 12 isoform X1
TrEMBLA0A0K0KBG60.0A0A0K0KBG6_ARAHY; Squamosa promoter-binding-like protein
STRINGGLYMA18G00903.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46303058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.31e-56squamosa promoter binding protein-like 2