PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.I7143

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 205aa MW: 22634 Da PI: 6.2773

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.I7143	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.0011	48	68	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cg +F++++ +H r H Aradu.I7143 48 CHKCGWPFPNPHPSAKHRRAH 68 *****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	48	68	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MAQSMLPKRF YHHSWTFSLR LQVLSLCCAG SKAINDPKGH ESHGVHLCHK CGWPFPNPHP 60 SAKHRRAHKM ICGTIEDYKL CSSEEQSRSN GSDDGHGSDN DKKSPGPEVL NIGNKEKGDS 120 GIGDKINRSE DEAFSDAVAD FPDSQGVKES LQEGSLDLST SMEWDGKDDP KFSESSKDSD 180 FNDSKVISQF KSSIFMCSKH MEAVV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.I7143

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020979662.1	2e-99	uncharacterized protein LOC107644337
TrEMBL	A0A445DUW5	1e-91	A0A445DUW5_ARAHY; Uncharacterized protein
STRING	GLYMA08G11280.2	6e-52	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5051	17	19