PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.I2J7R | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | LBD | ||||||||
Protein Properties | Length: 173aa MW: 18831.4 Da PI: 8.483 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 147.1 | 4.9e-46 | 17 | 116 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvh++FGasnv k+l++lp ++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+a+la ++ Aradu.I2J7R 17 PCAACKLLRRRCAQDCVFAPYFPADEPHKFANVHRVFGASNVNKMLQDLPMHQRRDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLAIAQ 114 7**********************************************************************************************998 PP DUF260 99 ee 100 +e Aradu.I2J7R 115 AE 116 76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.766 | 16 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-45 | 17 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MKEQGGGGGR KQGAASPCAA CKLLRRRCAQ DCVFAPYFPA DEPHKFANVH RVFGASNVNK 60 MLQDLPMHQR RDAVSSMVYE ANARVRDPVY GCVGAISSLQ QQIDVLQAQL AIAQAEVVHL 120 KMRQPNYISN GMGPNSPTNS GSPPSKVMDS QAKPIFGMDM VVDQASYDDS MWS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-49 | 13 | 118 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-49 | 13 | 118 | 7 | 112 | LOB family transfactor Ramosa2.1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.I2J7R |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015959233.1 | 1e-127 | LOB domain-containing protein 4 | ||||
Refseq | XP_025694254.1 | 1e-127 | LOB domain-containing protein 4 | ||||
Swissprot | Q9SHE9 | 4e-72 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A445DIX4 | 1e-126 | A0A445DIX4_ARAHY; Uncharacterized protein | ||||
STRING | XP_004505337.1 | 4e-97 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1334 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 9e-73 | LOB domain-containing protein 4 |