PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.GFT3R | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | LBD | ||||||||
Protein Properties | Length: 258aa MW: 28369.6 Da PI: 7.4826 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.2 | 2.7e-38 | 37 | 138 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r++a+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ el+++ Aradu.GFT3R 37 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPVNRRHEAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQGELSMV 134 7***********************9989********************************************************************** PP DUF260 98 keel 101 +++l Aradu.GFT3R 135 QNQL 138 9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.668 | 36 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.5E-38 | 37 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MSERQGVGDH GTNSGTRRKG AATKRAMAVA AAATVPPCGA CKFLRRKCIS GCIFAPHFGS 60 DQGAARFAAV HKVFGASNVS KLLLHIPVNR RHEAVVTISY EAQARLSDPV YGCVSTILAL 120 QQQVASLQGE LSMVQNQLIN SRFAYANVLH QCTQQHHHHH HHDNNQPNMI NVSLLQQPAY 180 SNNNSSASTN NNLVNMNTFN NNNNNHSGFE LAMEAAPSSP PHSFEPLRLS QENNDEDDEE 240 ESIIIPQLFN HEIVLHRQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-36 | 31 | 140 | 1 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-36 | 31 | 140 | 1 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.GFT3R |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015970869.1 | 0.0 | LOB domain-containing protein 20-like | ||||
Swissprot | Q9SRV3 | 6e-74 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | A0A444YQV2 | 0.0 | A0A444YQV2_ARAHY; Uncharacterized protein | ||||
STRING | cassava4.1_028764m | 2e-90 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7715 | 31 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 3e-66 | LOB domain-containing protein 20 |