PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.G27H3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 494aa MW: 55755.3 Da PI: 5.9552 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.2 | 2.6e-12 | 303 | 348 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ +++Ka+ L Av YI++L Aradu.G27H3 303 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEL 348 799***********************6.....4***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.5E-39 | 25 | 192 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 1.57E-17 | 299 | 362 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.015 | 299 | 348 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.92E-14 | 302 | 353 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.1E-16 | 303 | 361 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.8E-10 | 303 | 348 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.7E-16 | 305 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 494 aa Download sequence Send to blast |
MEDMIISPSS SSSLVSIPQE NTPTLQQKLH FLLQNQLPEW WVYGIFWHTT NDDNGNLFLS 60 WGDGHFQGAK DASSPRLIPH YPISVTDRCR KFNNNSNNNN DGEWFYMMSL TRTFPMGEAL 120 YSSLPGKAFG SGSPIWLNGD LQFCDCDRAK EAYMHGIRTL VHIPTTDGVL EMGSYDLITE 180 NWALLQQTKS LFGSQHQQLN PIQFFDDQNI SFADIGIIAG VQEEDNSHEE DAVRKRKETE 240 ALNNKKKNKD HSSMGKFRSS RQSSFVDSEH SDSDCGAPMA AAEKRLPKKR GRKPGIGRET 300 PLNHVEAERQ RREKLNHRFY ALRAVVPNVS RMDKASLLSD AVSYINELKA KIEELETQVQ 360 KESSMNNNNK KVKVETGDSM DNQSTTTTSS VDQNNNENEA AEVQVEVEVE VKMIGEEAAM 420 VRVQSESGTH PGAKLLNALR ELEFQVQHGS MWCVNESSIM LQHVLVKLPE GITMRTEQAL 480 KSSILSRLLD HHNQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 7e-28 | 296 | 381 | 1 | 83 | Transcription factor MYC2 |
5gnj_B | 7e-28 | 296 | 381 | 1 | 83 | Transcription factor MYC2 |
5gnj_E | 7e-28 | 296 | 381 | 1 | 83 | Transcription factor MYC2 |
5gnj_F | 7e-28 | 296 | 381 | 1 | 83 | Transcription factor MYC2 |
5gnj_G | 7e-28 | 296 | 381 | 1 | 83 | Transcription factor MYC2 |
5gnj_I | 7e-28 | 296 | 381 | 1 | 83 | Transcription factor MYC2 |
5gnj_M | 7e-28 | 296 | 381 | 1 | 83 | Transcription factor MYC2 |
5gnj_N | 7e-28 | 296 | 381 | 1 | 83 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.G27H3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015968235.1 | 0.0 | transcription factor MYC2-like | ||||
Refseq | XP_025603320.1 | 0.0 | transcription factor MYC2 | ||||
TrEMBL | A0A445CPJ7 | 0.0 | A0A445CPJ7_ARAHY; Uncharacterized protein | ||||
STRING | EOX95614 | 1e-168 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF841 | 34 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17880.1 | 8e-64 | bHLH family protein |