PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.G1MD8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | GRAS | ||||||||
Protein Properties | Length: 609aa MW: 68929.7 Da PI: 6.2124 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 349.2 | 6.8e-107 | 237 | 606 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL++cA+avss++ +a++lL +++ ++sp+gd++qRl ++f++AL+ar+a++++++ +al++++ s s+ ++a+k+f ++P+ kf+ Aradu.G1MD8 237 LRSLLMQCAQAVSSDNRPMAKELLMQIKLHSSPTGDATQRLSHCFVNALEARMAGTGTHIHSALSTKRPS---ASDMVKAYKMFTLACPFDKFGIRFS 331 689*************************************************************999999...8999*****************9999 PP GRAS 99 NqaIle.avegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 + I + a+eg +++Hi+ f+i +G++Wp L+ L+ p+gpp+lRiTg++ p +le+tg+ La+++e++++pfefn++vak++e +++e+L+ Aradu.G1MD8 332 VNSIGDlAMEGVQTLHIVEFGIRYGFKWPGLMYRLSRLPSGPPKLRITGIEYPL--PGLKLEQTGQCLARYCERFNIPFEFNAIVAKKWERIKVEDLK 427 999988579999****************************************66..99**************************************** PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 ++++E +aVn++++ ++l+de+v le++rd+vL+l+++ +P+++v+ + +++++ F++rf ea+ +ysa+fd+l+++++r++ r ++E++++g+e Aradu.G1MD8 428 IRENEFVAVNCMFRFENLHDETVVLENPRDSVLELIRKANPNIFVHGIINGNYDAAFFVTRFKEAMFHYSAMFDMLDNTVARDDPIRLMYEEAIFGKE 525 ************************************************************************************************** PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 ++nvvaceg+er+er +++kW+ r ++aGF++++l+e++ ++ k +lr+ + + ++++ + ++l++gWk+r L++ S+W Aradu.G1MD8 526 VMNVVACEGNERIERPHNYKKWQVRNTRAGFRQLSLDEQMIEKFKDMLRNEGyHRDFMLHADGKWLLQGWKGRILYASSCW 606 *************************************************9999999************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 60.04 | 211 | 586 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.4E-104 | 237 | 606 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 609 aa Download sequence Send to blast |
MADPSHGGNP ATDFTTSREE NPAPFDESDF SAAALKYIDE MLMEEDIDEE YNMFQHSSAL 60 LAAEKSLYDA IGQRYPSSAS TLWSSTSSIQ HHNYYPNVES PGDSYSSTSS GSTCGTTNTS 120 SSADYFWSGF DLSMIPLMPN TLPFPDTFNF QSNPSSTTPQ SNHRSDFTAT NNRSSSKQSA 180 LYMDDTELSE FFDKVLIGAG LGRGSSQADE GIPKDSRGKK SRARKRNDKN DDEVIDLRSL 240 LMQCAQAVSS DNRPMAKELL MQIKLHSSPT GDATQRLSHC FVNALEARMA GTGTHIHSAL 300 STKRPSASDM VKAYKMFTLA CPFDKFGIRF SVNSIGDLAM EGVQTLHIVE FGIRYGFKWP 360 GLMYRLSRLP SGPPKLRITG IEYPLPGLKL EQTGQCLARY CERFNIPFEF NAIVAKKWER 420 IKVEDLKIRE NEFVAVNCMF RFENLHDETV VLENPRDSVL ELIRKANPNI FVHGIINGNY 480 DAAFFVTRFK EAMFHYSAMF DMLDNTVARD DPIRLMYEEA IFGKEVMNVV ACEGNERIER 540 PHNYKKWQVR NTRAGFRQLS LDEQMIEKFK DMLRNEGYHR DFMLHADGKW LLQGWKGRIL 600 YASSCWVPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 7e-46 | 226 | 608 | 8 | 380 | Protein SCARECROW |
5b3h_A | 7e-46 | 226 | 608 | 7 | 379 | Protein SCARECROW |
5b3h_D | 7e-46 | 226 | 608 | 7 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.G1MD8 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015935564.1 | 0.0 | scarecrow-like protein 14 | ||||
Refseq | XP_020984791.1 | 0.0 | scarecrow-like protein 14 | ||||
Refseq | XP_020984792.1 | 0.0 | scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 1e-169 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A445BVP4 | 0.0 | A0A445BVP4_ARAHY; Uncharacterized protein | ||||
STRING | XP_007132057.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-171 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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