PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.G1MD8
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 609aa    MW: 68929.7 Da    PI: 6.2124
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.G1MD8genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS349.26.8e-1072376061373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL++cA+avss++  +a++lL +++ ++sp+gd++qRl ++f++AL+ar+a++++++ +al++++ s    s+ ++a+k+f  ++P+ kf+    
  Aradu.G1MD8 237 LRSLLMQCAQAVSSDNRPMAKELLMQIKLHSSPTGDATQRLSHCFVNALEARMAGTGTHIHSALSTKRPS---ASDMVKAYKMFTLACPFDKFGIRFS 331
                  689*************************************************************999999...8999*****************9999 PP

         GRAS  99 NqaIle.avegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                   + I + a+eg +++Hi+ f+i +G++Wp L+  L+  p+gpp+lRiTg++ p      +le+tg+ La+++e++++pfefn++vak++e +++e+L+
  Aradu.G1MD8 332 VNSIGDlAMEGVQTLHIVEFGIRYGFKWPGLMYRLSRLPSGPPKLRITGIEYPL--PGLKLEQTGQCLARYCERFNIPFEFNAIVAKKWERIKVEDLK 427
                  999988579999****************************************66..99**************************************** PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  ++++E +aVn++++ ++l+de+v le++rd+vL+l+++ +P+++v+   + +++++ F++rf ea+ +ysa+fd+l+++++r++  r ++E++++g+e
  Aradu.G1MD8 428 IRENEFVAVNCMFRFENLHDETVVLENPRDSVLELIRKANPNIFVHGIINGNYDAAFFVTRFKEAMFHYSAMFDMLDNTVARDDPIRLMYEEAIFGKE 525
                  ************************************************************************************************** PP

         GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                  ++nvvaceg+er+er  +++kW+ r ++aGF++++l+e++ ++ k +lr+ +  + ++++ + ++l++gWk+r L++ S+W
  Aradu.G1MD8 526 VMNVVACEGNERIERPHNYKKWQVRNTRAGFRQLSLDEQMIEKFKDMLRNEGyHRDFMLHADGKWLLQGWKGRILYASSCW 606
                  *************************************************9999999************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.04211586IPR005202Transcription factor GRAS
PfamPF035142.4E-104237606IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MADPSHGGNP ATDFTTSREE NPAPFDESDF SAAALKYIDE MLMEEDIDEE YNMFQHSSAL  60
LAAEKSLYDA IGQRYPSSAS TLWSSTSSIQ HHNYYPNVES PGDSYSSTSS GSTCGTTNTS  120
SSADYFWSGF DLSMIPLMPN TLPFPDTFNF QSNPSSTTPQ SNHRSDFTAT NNRSSSKQSA  180
LYMDDTELSE FFDKVLIGAG LGRGSSQADE GIPKDSRGKK SRARKRNDKN DDEVIDLRSL  240
LMQCAQAVSS DNRPMAKELL MQIKLHSSPT GDATQRLSHC FVNALEARMA GTGTHIHSAL  300
STKRPSASDM VKAYKMFTLA CPFDKFGIRF SVNSIGDLAM EGVQTLHIVE FGIRYGFKWP  360
GLMYRLSRLP SGPPKLRITG IEYPLPGLKL EQTGQCLARY CERFNIPFEF NAIVAKKWER  420
IKVEDLKIRE NEFVAVNCMF RFENLHDETV VLENPRDSVL ELIRKANPNI FVHGIINGNY  480
DAAFFVTRFK EAMFHYSAMF DMLDNTVARD DPIRLMYEEA IFGKEVMNVV ACEGNERIER  540
PHNYKKWQVR NTRAGFRQLS LDEQMIEKFK DMLRNEGYHR DFMLHADGKW LLQGWKGRIL  600
YASSCWVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-462266088380Protein SCARECROW
5b3h_A7e-462266087379Protein SCARECROW
5b3h_D7e-462266087379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.G1MD8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015935564.10.0scarecrow-like protein 14
RefseqXP_020984791.10.0scarecrow-like protein 14
RefseqXP_020984792.10.0scarecrow-like protein 14
SwissprotQ9XE581e-169SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A445BVP40.0A0A445BVP4_ARAHY; Uncharacterized protein
STRINGXP_007132057.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-171SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]