PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.G1834 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 211aa MW: 24672.6 Da PI: 5.0061 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 80.4 | 3.2e-25 | 92 | 183 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn YAk+ GFs rks+ +++ +n+ +t++ fvC ++g+r+ +++ ++++r++r++tr+gC a+++v+ ++ +g+w v+ +++eHnHe+ Aradu.G1834 92 SFYNLYAKMNGFSARKSRIRRNVNND-VTQQAFVCFRQGFRDLYSDNdaARRKREPRPTTRCGCGAEMRVHIHEeTGRWIVSYFQEEHNHEML 183 5********************96655.**************98877766788999****************9999***************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-22 | 92 | 183 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MAGLEDFCAE QEAPLYSEGM NVLHDLDPQE RTLEDVSDCV SDSDEYFGDN FYDDWDNRAI 60 NGIADLQTVK FKELTADQIR RLHFPDRSVA FSFYNLYAKM NGFSARKSRI RRNVNNDVTQ 120 QAFVCFRQGF RDLYSDNDAA RRKREPRPTT RCGCGAEMRV HIHEETGRWI VSYFQEEHNH 180 EMLDDMLTFM LPGHRKMNSA AIDQMNMMLK V |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.G1834 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020991221.1 | 1e-158 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
TrEMBL | A0A444ZLL6 | 1e-150 | A0A444ZLL6_ARAHY; Uncharacterized protein | ||||
STRING | AES67962 | 1e-31 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3613 | 6 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 8e-17 | FAR1-related sequence 5 |