PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.FPU47
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 341aa    MW: 38454.3 Da    PI: 4.8018
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.FPU47genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.4e-12181224654
                  HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                   ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Aradu.FPU47 181 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 224
                  589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-15177239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-12181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9181224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.01E-4182229No hitNo description
Gene3DG3DSA:4.10.280.101.1E-14182238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00305267308No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MELSQLGFLE ELLLLAPRRV EETCWNNGFN DLLPTTPPPS ASVSASWSFD SLDDNPSLNP  60
SFSSFSTPLD HRFDSSYAAS FPFLDAFTIP PELHHSPPPL LPQQEHNHNN HHPLVEEEEE  120
ELGFLGNDDN NQSLEERNSG RCKVEEQQAL EVPAVVFNMG MCGEKKVPKS KKLEGQPSKN  180
LMAERRRRKR LNDRLSMLRS IVPKISKMDR TSILGDTIDY MKELLERIAK LQEETMEEEG  240
KNQIHLLGIS KELKPNEFDV ERRDHDTRIS ICCATKPGLL LSTVNTLEAL GLEIHQCVIS  300
GFNDFSMQAS CSEVAEERNC ISTEDVKQAL FKNAGYGGRC V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183190ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.FPU47
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015963319.10.0transcription factor bHLH93
RefseqXP_025651147.10.0transcription factor bHLH93-like
RefseqXP_025697802.10.0transcription factor bHLH93-like
SwissprotQ9LSL16e-80BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A444WVR90.0A0A444WVR9_ARAHY; Uncharacterized protein
STRINGGLYMA01G02390.11e-145(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-81beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]