PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.ER3NJ | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | G2-like | ||||||||
Protein Properties | Length: 431aa MW: 47495.1 Da PI: 8.0431 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.3 | 1.4e-32 | 278 | 333 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a+++LGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+ Aradu.ER3NJ 278 KQRRCWSPELHRRFVNALQKLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 333 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.89E-18 | 275 | 336 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.461 | 275 | 335 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-29 | 276 | 336 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-27 | 278 | 333 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.4E-8 | 280 | 331 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MGSVPAELSL DIRAPTPPPP PPPSTPSFIP KTITDFLSAL STTGITASEK QSRINEELEK 60 CSEGERKSEP VLEVFIPLKR EFDHSEDDEE HNNNNNNNDN NNNNNNIRQE KECRDKMSWM 120 SSVQLWNASS STTLNNNNNN NAFDNNHKHH HQNHHHKFGT KKNQEYVVEN PFQSHSNVRN 180 NGGRGFMPFT SYTSCSVPVT TVALSATKEE KEDIGAINRL PLLTPAAAGG GVKTLREGSG 240 SSGSRTSSNN RPVSTSSPPA AAHRTAMMPL QPQQTARKQR RCWSPELHRR FVNALQKLGG 300 SQVATPKQIR ELMQVDGLTN DEVKSHLQKY RLHTRRVPSG SGNHSHNHNQ SVVVLGGLWM 360 SQGQDQCNDS SKGSSSGSGS PQSPLHLATR SRGGTSPAEA DDSMEDDEDA KSESYSWKSH 420 THHKQVKVVD V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-13 | 278 | 331 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-13 | 278 | 331 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-13 | 278 | 331 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-13 | 278 | 331 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00193 | DAP | Transfer from AT1G49560 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.ER3NJ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015944942.1 | 0.0 | transcription factor HRS1 | ||||
TrEMBL | A0A445B793 | 0.0 | A0A445B793_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA02G15320.1 | 1e-107 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1208 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68670.1 | 1e-36 | G2-like family protein |