PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.E558D
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family Trihelix
Protein Properties Length: 481aa    MW: 54300.1 Da    PI: 6.7685
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.E558DgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.61.7e-23114221186
     trihelix   1 rWtkqevlaLiearremeerlrrgk.....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsess 76 
                  +Wt+ +v++Li a+ +++++ +++                      +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++
  Aradu.E558D 114 KWTDAMVRLLIMAVYYIGDEAGSEGvgggggggvdpsgkkkntgllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVV 211
                  7**************9999988765566778888888999999999**********************************************559*** PP

     trihelix  77 stcpyfdqle 86 
                  ++ ++++ ++
  Aradu.E558D 212 ENQSLLETMD 221
                  ****999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.7E-21112246No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MEANGIGSGI YTSINTSLLG IENNTLQQNP HNNLHHQPPP PQMVYSTHHD TESHPSQQQQ  60
QQQPQQAMKH GYPYSSKKPQ SSTFSDEDEP GGGFGADESS GDPKRKASPW HRMKWTDAMV  120
RLLIMAVYYI GDEAGSEGVG GGGGGGVDPS GKKKNTGLLQ KKGKWKSVSR AMMEKGFYVS  180
PQQCEDKFND LNKRYKRVND ILGKGTACRV VENQSLLETM DLSLKMKEEV RKLLNSKHLF  240
FREMCAYHNS CGHGGGAAAV TAAGNGQHSA EAGTEQPLQI QQPQPPQHQQ GQQRCFHSSV  300
NGVGMLKEDD DDEEDYESDD FSDEDEEESG EGGGSRGQVE DDENDVVRSR KRHRNKGGFC  360
VTSSSTSASQ LMQQLNNEVA GVLQDGGKNP WEKKQWMKKR VLQLEEQQVR YHVEAFELEK  420
QRLKWVRFSS KKERDMERDK LENERRRLEN ERLLLLLRQK ELEFTALHHL KHQQQQQHSS  480
T
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.E558D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015970322.10.0uncharacterized protein LOC107493784
TrEMBLA0A445CQT70.0A0A445CQT7_ARAHY; Uncharacterized protein
STRINGXP_007162836.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.12e-68sequence-specific DNA binding transcription factors