PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.DT0CL | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 633aa MW: 73138.9 Da PI: 7.2435 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 71.4 | 2e-22 | 168 | 258 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 fYn YAk+ GF rk++ +++ ++ t+++fvC ++g+re +k e++r++++etr+gC a+++v+++ +g+w ++ +++ HnHe+ Aradu.DT0CL 168 FYNLYAKMNGFAARKTRLRRN-AKKLATQQQFVCFRQGFREFAADKeaYERKREPKPETRCGCLAQMRVHLHLeSGRWIISYFDNVHNHEML 258 9*******************9.55669*************97666645799999*****************998***************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.3E-20 | 168 | 258 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 9.878 | 384 | 420 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0022 | 395 | 422 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 3.9E-4 | 397 | 419 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 633 aa Download sequence Send to blast |
QALGCRLADD PHPHWLICWR LGAGRLRLIG PRRVVGRRPV LRRRFIKELF SPCLASYKVV 60 GRLEEEDVAS LVHGAPAMAD EVSFVGNEEE LVSDEPYVCV GDEPSSEASE DANMDGYCGY 120 NDGDDFYESW EDRGIDGIAD FGRINFKEIS FDEMRLLHFP DRHVAFAFYN LYAKMNGFAA 180 RKTRLRRNAK KLATQQQFVC FRQGFREFAA DKEAYERKRE PKPETRCGCL AQMRVHLHLE 240 SGRWIISYFD NVHNHEMLDG TLTFMLPGHR KMNSTAIEQM NMMLRVGIKT PQIYSAFVHT 300 AGGFQNMRSR EAQSDMHSVV GHLVLQSPLH DLERSAAKLL TREIFILFRP MLSRACTLKV 360 RSCTLTPTSD IYTISRWGNS HNYWHVSHYP EDSIFKCSCL RMESLGIPCD HIVALLVHLD 420 FTEIPTSLVL ERWSKNARSK MRQYVEKGPF SWDSMVSCRN WMLNDLCREM CVLASVREDK 480 FETMTEKIRS EINRLKHDTE AGPSTPAVVG QSSTLEGCVQ NPLVVRRKKR PKRDSVNRTL 540 VRGVRRCSIC HRVGHNRTSC QSNVRQGQRQ QPSHEEDVDE DNYYTPNFGE EVDVCSLEYA 600 HYHSQPVGQE EHFGRYEEEF QVPLTDPYYS WHE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 526 | 533 | RKKRPKRD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.DT0CL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015966466.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A445E1N8 | 0.0 | A0A445E1N8_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3613 | 6 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 5e-16 | FAR1-related sequence 5 |