PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.DFG4H
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 739aa    MW: 81394.9 Da    PI: 7.7728
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.DFG4HgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.91.4e-07339359526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ f++ G C+ Gd+C +aHg
  Aradu.DFG4H 339 PCPEFRK-GSCQKGDSCEYAHG 359
                  8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.82E-1591217IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.5E-1595238IPR020683Ankyrin repeat-containing domain
PfamPF127964.3E-8117206IPR020683Ankyrin repeat-containing domain
SMARTSM002480.038140170IPR002110Ankyrin repeat
CDDcd002048.95E-12140215No hitNo description
PROSITE profilePS5029714.743140220IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.099175210IPR002110Ankyrin repeat
SMARTSM002480.02175207IPR002110Ankyrin repeat
SMARTSM003564.0E-5334360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.544334361IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-5339359IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4339361IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-4366398IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.15369393IPR000571Zinc finger, CCCH-type
SMARTSM0035625369392IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
CCWWALFSKT IKRLPPPILL PHLQFSIEVF SIFFSLHTHS SLSLSATKTT LSQYYIHTFS  60
RIWGMCSGSK SKLSPSDKVM EGELQKQNQD GVHNFSALLE LSASDDFEAF RREVEEKGCD  120
VNDAGFWYGR RIGSKKMGFE KRTPLMIASL FGSTRVLKYI IETGMVDVNR ACGSDRATAL  180
HCAVAGGSES SLEIVKLLLD AHADADCVDA SGNKPVNLIA PAFNSLSSSR RKAIELFLRG  240
GERDQLFNQE MEQQMLSSLS LKEGLEKKEG ADKKEYPVDV SLPDINNGVY GTDEFRMYSF  300
KVKPCSRAYS HDWTECPFVH PGENARRRDP RKYPYSCVPC PEFRKGSCQK GDSCEYAHGV  360
FESWLHPAQY RTRLCKDETG CSRKVCFFAH KPEELRPVYA STGSAMPSPK SYSASGLDMT  420
AMSPLSLSSS SLPMPTVSTP PMSPLAASSS PKSGSLWANK INLTPPSLQL PGSRLKTALS  480
ARDFDMEMEL LGLDSPARQQ QQQQQQLIEE IARISSPSFR SRIGDLNPTN LDDLLAAADP  540
SLLSQLHGIS AQPSTPTQLQ SSMRQNMNHL RASYPSNVTS SPVRKPSAFG FDSSAAVAAA  600
VMNSRSAAFA KRSQSFIDRS AANHHIGLSS PSNPSCRVSS GLSDWNSPSG KLDWGVNGDE  660
LNKLRKSASF GFRNNGAATA SPLAQSEHVE PDVSWVHSLV PSESSEIFGA EKKQQFDLSK  720
ERLPPWVEQL YIEQEQMVA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.DFG4H
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015931286.10.0zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A445C5C90.0A0A445C5C9_ARAHY; Uncharacterized protein
STRINGGLYMA14G01990.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein