PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.D4D3U
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 537aa    MW: 62980.4 Da    PI: 9.1896
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.D4D3UgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.53e-2023110189
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                  +f+ +Y+ ++GF vrk++s+k+  +g+i + +fvC+keg r+++k++ + +  +r etrt+C  kl ++  k  +k+e++++ +eHnH+l
  Aradu.D4D3U  23 QFWIDYGGRMGFGVRKQYSNKN-ADGKILSLRFVCTKEGVRKSDKRD-SLTVIPRLETRTNCGVKLGIRYIKgIEKYEIHDFFSEHNHPL 110
                  699*****************99.8899*****************999.9999********************99**************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-1523110IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.273323359IPR007527Zinc finger, SWIM-type
PfamPF044342.6E-6323357IPR007527Zinc finger, SWIM-type
SMARTSM005756.0E-4334361IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MDVEFDWLPK LGKIFNTVEE AWQFWIDYGG RMGFGVRKQY SNKNADGKIL SLRFVCTKEG  60
VRKSDKRDSL TVIPRLETRT NCGVKLGIRY IKGIEKYEIH DFFSEHNHPL HLSHTTHMLT  120
CQRKISQVQA QEIEMADDSG ITQRASFELM SRQVGGRENI GYTHETNFKE AWDKLLDDYD  180
LKENKWLMNL YKLKEKWARC YMNNAFTIGM RSTQLSESLN ADLKNCMKPN LNIIQFFNHF  240
ERVVNDKRYN ELQGEFQSRQ KLPRLKMVSS PLLQQVSEVY TLPLFNLFQE EYDKYSAACI  300
REVNDRSFVY EYVVALCNEN KEFKVTFDPS LSSISCNCRK FETFGILCCH AIKVLDVKDI  360
KLLPEQYILK RWTRGAMRRL VKDMHGRIVE EDTCLTSTQW FKQTCPKLVR TVTQASDCKE  420
ARVFVEKAVE ELSKKVDDIC KLNLGLEIND TDSSLPIQCT NLQLLEVRGL KRRNGVRNFR  480
RRPKSWVEKQ PKNKKNQFSN TSQQQKQDKV IKLNGSISQL DEHGFNRLLM VSFLNYL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1467472RGLKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.D4D3U
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025616747.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K3PRH21e-146A0A2K3PRH2_TRIPR; Protein FAR1-related sequence 5-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30451449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.24e-32far-red elongated hypocotyls 3