PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.B78K2
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 405aa    MW: 46244.4 Da    PI: 8.8465
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.B78K2genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.8e-1471110848
                      HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      Ed ll++ vk++  ++Wk+Ia+++  gRt+ qc +rwqk+l
      Aradu.B78K2  71 EDNLLIQIVKKHEARNWKKIAAYLS-GRTEAQCLHRWQKVL 110
                      99***********************.************986 PP
2Myb_DNA-binding57.43.3e-18116162148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd++l ++v+++G ++W+ Ia+ ++ gR +kqc++rw++ l
      Aradu.B78K2 116 KGYWTKEEDDRLTELVRKYGLKRWAEIAKFLP-GRIGKQCRERWHNNL 162
                      689*****************************.************975 PP
3Myb_DNA-binding54.82.2e-17168211146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT+eE++ l+++++ +G++ W+ Iar+++ gR+++ +k++w+ 
      Aradu.B78K2 168 KDAWTEEEELALAHYHQIYGSK-WAVIARYLP-GRSDNAIKNHWNR 211
                      689*******************.*********.***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.51951110IPR017930Myb domain
SuperFamilySSF466895.31E-1271114IPR009057Homeodomain-like
SMARTSM007171.1E-671112IPR001005SANT/Myb domain
PfamPF002491.9E-1271110IPR001005SANT/Myb domain
CDDcd001671.28E-1071110No hitNo description
Gene3DG3DSA:1.10.10.601.2E-1871121IPR009057Homeodomain-like
PROSITE profilePS5129429.16111166IPR017930Myb domain
SuperFamilySSF466897.11E-32113209IPR009057Homeodomain-like
SMARTSM007175.3E-18115164IPR001005SANT/Myb domain
PfamPF002493.0E-17116162IPR001005SANT/Myb domain
CDDcd001674.24E-16119162No hitNo description
Gene3DG3DSA:1.10.10.602.2E-26122168IPR009057Homeodomain-like
PROSITE profilePS5129418.441167217IPR017930Myb domain
SMARTSM007171.1E-15167215IPR001005SANT/Myb domain
PfamPF002491.0E-15168210IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-20169216IPR009057Homeodomain-like
CDDcd001671.77E-11170211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MMLEVETELE ELSFEFDSSE GDGVHLCLSS SNCNCDATLL KSTPVSGLKL DAGRRKRYLT  60
HFTPYIILIF EDNLLIQIVK KHEARNWKKI AAYLSGRTEA QCLHRWQKVL DPDLVKGYWT  120
KEEDDRLTEL VRKYGLKRWA EIAKFLPGRI GKQCRERWHN NLDPAIKKDA WTEEEELALA  180
HYHQIYGSKW AVIARYLPGR SDNAIKNHWN RSMKKKGDAS SHLGFDLNVA TSGFRTSPIV  240
PAHVSVKVDS HSFNEMDSKH RVDNFPTHLV LQKPSKSPKR QKVSSSDAKR DQVGNGSNNK  300
INSTCHNADD MSNDIGCGDN NDSRDTRTMF EQSPERVLRS LAMTYENIPS IIRKRTPTKA  360
ECAQTPEDER VISLRNLKLS REFIPSIITT PNTKAIAKSL EGYME
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-587121613158MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-587121613158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.B78K2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2086640.0KF208664.1 Arachis hypogaea putative 3R MYB protein 10 (MYB10) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025700045.10.0myb-related protein B isoform X1
RefseqXP_025700046.10.0myb-related protein B isoform X1
TrEMBLA0A445D6470.0A0A445D647_ARAHY; Uncharacterized protein
STRINGGLYMA01G42650.11e-118(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133012528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.28e-68myb domain protein 3r-5