PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aradu.7NI41 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 286aa MW: 32587.4 Da PI: 8.2593 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106.7 | 2.9e-33 | 49 | 190 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyWk 84 lp+G++F+Ptd+e++ e+L++kv+++ ++l+ +++ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ + +W+ Aradu.7NI41 49 LPAGVKFDPTDQEIL-EHLEAKVRSDIHKLHPlidefipTLEGEnGICYTHPENLP-GVSKDGLIRHFFHRPSKAYTTGTRKRRKVNsdeegnETRWH 144 799***********9.99*****99984443333333222333336**********.555555677******************844455444788** PP NAM 85 atgkdkevlskkgelvglkktLvfy...kgrapkgektdWvmheyrl 128 +tgk+++v+ +g+l+g kk+Lv+y g+++k+ekt+Wvmh+y+l Aradu.7NI41 145 KTGKTRPVYI-RGKLKGYKKILVLYtnyGGKQRKPEKTNWVMHQYHL 190 **********.999***********66658999999*********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-37 | 44 | 209 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.65 | 49 | 209 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-15 | 50 | 190 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 286 aa Download sequence Send to blast |
MSESNEHENN HGNIIVEGRK DSLIRTCPTC GHHIKCQDQG GGIHDLPGLP AGVKFDPTDQ 60 EILEHLEAKV RSDIHKLHPL IDEFIPTLEG ENGICYTHPE NLPGVSKDGL IRHFFHRPSK 120 AYTTGTRKRR KVNSDEEGNE TRWHKTGKTR PVYIRGKLKG YKKILVLYTN YGGKQRKPEK 180 TNWVMHQYHL GNDEEEKEGE LVVSKVFYQT HPRQCSSLLI NNNKDSSTAA LVKGNNNNGF 240 VEYYHSNFIS FDQGEHQHRS SGAQVVISHF PVHEGAPNYH SLNRKE |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Aradu.7NI41 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015953691.1 | 0.0 | NAC domain-containing protein 73-like | ||||
Swissprot | O49459 | 1e-110 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A445DZS4 | 0.0 | A0A445DZS4_ARAHY; Uncharacterized protein | ||||
STRING | XP_007132767.1 | 1e-168 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1228 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-112 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
---|---|---|---|
|