PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.68MCI | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C2H2 | ||||||||
Protein Properties | Length: 343aa MW: 37324.6 Da PI: 6.9096 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00081 | 138 | 160 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Aradu.68MCI 138 YECKTCNRTFPSFQALGGHRASH 160 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 13 | 0.0003 | 239 | 261 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Aradu.68MCI 239 HECSICGSEFTSGQALGGHMRRH 261 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.26E-8 | 137 | 160 | No hit | No description |
Pfam | PF13912 | 6.7E-13 | 138 | 162 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.305 | 138 | 165 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.052 | 138 | 160 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 140 | 160 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.26E-8 | 234 | 261 | No hit | No description |
PROSITE profile | PS50157 | 10.014 | 239 | 266 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.8E-11 | 239 | 263 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.019 | 239 | 261 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 241 | 261 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MDYKEDYFSN TNSDNCNVVH HDATHHIAKG KRTKRLRLLC GGTTLMTAAS SCSSASGDHG 60 SGDDHGSFSI SSTTNQEEED MANCLILLAQ GGGDSHQKPP QIDDQDEDDN KKIIEIKSRK 120 FSEIETATIN NKVGFYIYEC KTCNRTFPSF QALGGHRASH KKPKLTTIPA AEDKKPPPPS 180 PPPPLPPPPP QQLMMNTNYD HSQQTETVPP NNNNPIISLQ FGSGQKGNFH NNNKPNKIHE 240 CSICGSEFTS GQALGGHMRR HRATAAAAAN NTAQANVGLS RIEATSTVIT TTVEVQPRNI 300 LELDLNLPAP EEDLREPKFQ FATAATKKSM VLSAAPALVD CHY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.68MCI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015951757.1 | 0.0 | zinc finger protein ZAT5-like | ||||
TrEMBL | A0A445E582 | 0.0 | A0A445E582_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA11G19830.1 | 8e-78 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 1e-53 | C2H2 family protein |