PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.5E0HP
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 979aa    MW: 108747 Da    PI: 5.3108
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.5E0HPgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.9e-183783148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEde+l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
      Aradu.5E0HP 37 KGQWTAEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83
                     799****************************9.************986 PP
2Myb_DNA-binding26.61.4e-081041282348
                      -HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  23 tWktIartmgkgRtlkqcksrwqkyl 48 
                      +W+tIa+ ++ gR +kqc++rw+++l
      Aradu.5E0HP 104 SWSTIAQSLP-GRIGKQCRERWHNHL 128
                      7*********.*************97 PP
3Myb_DNA-binding48.32.3e-15134176145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE++ l++a++ +G++ W+   + ++ gRt++ +k++w+
      Aradu.5E0HP 134 KEAWTQEEELALIRAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 176
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.243287IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-203493IPR009057Homeodomain-like
SuperFamilySSF466891.59E-173595IPR009057Homeodomain-like
SMARTSM007172.2E-153685IPR001005SANT/Myb domain
PfamPF139214.0E-164097No hitNo description
CDDcd001673.34E-144083No hitNo description
SMARTSM007170.3588130IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-16101136IPR009057Homeodomain-like
PfamPF002491.0E-6104128IPR001005SANT/Myb domain
PROSITE profilePS500907.375105128IPR017877Myb-like domain
SuperFamilySSF466895.59E-28108184IPR009057Homeodomain-like
PROSITE profilePS5129424.123129183IPR017930Myb domain
SMARTSM007176.3E-15133181IPR001005SANT/Myb domain
PfamPF002492.0E-13134177IPR001005SANT/Myb domain
CDDcd001671.11E-11136176No hitNo description
Gene3DG3DSA:1.10.10.602.8E-21137183IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 979 aa     Download sequence    Send to blast
MEGDREIIAA PNGVVDGVQR IRALHGRTTG PTRRSTKGQW TAEEDEILRK AVQRFKGKNW  60
KKIAECFKDR TDVQCLHRWQ KVLNPDLVKG PWSKEVTSTS HFYSWSTIAQ SLPGRIGKQC  120
RERWHNHLNP SINKEAWTQE EELALIRAHQ IYGNKWAELT KFLPGRTDNA IKNHWNSSVK  180
KKLDSYLASG LITPLSNVPL VGNPNQPMAS TSSKLQSSGD EAGHRGTEGE EVSQCSQESA  240
NATQFPSAKE MSNVLQYREE YRGNEEYGPG KGYSPSQASC SEPYYVSLDD ITISIPEMPR  300
QVTSSSQFIE QNYSQEPVNP AAGDCHHNLL SLPNISSLGF VQESTQLQNE CMVHAHSEGH  360
DMADAPFQTS VELAVSTSIR PTAMDSLREH MLISDDECCR VLFSEAISDD GPSSVDYNKG  420
VHMVDLSGCT SILHESSLPS ASVPTANDGR LQCTSETKHL LQPEDQQFVS RAHDVYANDL  480
ASASSIYGIC SAEMQEESDI VNDTSKLIPV NSFGCGPDTK KTDHSIMEKP NGHAEQEDTG  540
ALCYEPPRFP SSDIPFFSCD LVQSGSDMQQ EFSPLGIRQF MMSSMNCLTP FRLWDSPRHD  600
KSPDALLKSA AKTFTGTPSI LKKRHRDFLS PLSDKRLDKK LETSNLIKNF SRLDVMFDDS  660
ETQKADPLSP SPLKENLGPS SEMEQVDKKN EPPMLDDNKS VNDKDASDFL DKTEQRALDV  720
DSKRNDDVNT TVEIVQQHSG VLVDRDPNNL LLNSPKQVGV KSDIVLSART NKHACSSVKS  780
PCIRVKENER VSIALTCVQS VCSTAAVENL GDQTGKDGGF ETSSIFNETP FRRSLESPSP  840
WKSPWFINTF LSSPRIDTEI TIEDFGIFMS PCDRSYDAIG LMKQVSEQTA AQYANAHEIL  900
ENETPKALPK DASRNNRDEN KENNDPQKQH GNHSQLTSKA LVERRILDFS ECGSPGKGDS  960
SKSSSMILES PSSYLKDCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-56371836159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-56371836159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.5E0HP
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015945723.10.0transcription factor MYB3R-1
RefseqXP_015945724.10.0transcription factor MYB3R-1
SwissprotQ9S7G70.0MB3R1_ARATH; Transcription factor MYB3R-1
TrEMBLA0A445B4B30.0A0A445B4B3_ARAHY; Uncharacterized protein
STRINGGLYMA06G08660.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37273362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein
Publications ? help Back to Top
  1. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]