PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.3GN04

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NF-YC

Protein Properties

Length: 302aa MW: 32759.3 Da PI: 5.832

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.3GN04	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	177.8	1e-55	60	164	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflvdi Aradu.3GN04 60 QLQMFWSYQrqeIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDI 157 89***998899********************************************************************************* PP NF-YC 96 vprdelk 102 vprd++k Aradu.3GN04 158 VPRDDIK 164 **975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.06E-33	41	154	IPR009072	Histone-fold
Pfam	PF00808	2.5E-20	82	145	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.1E-36	83	160	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MENTTNTNNT HPHQQAQSSP YPGPPTLPPP PTTTTVVPGG APPPSSAAPF HHLLQQQQQQ 60 LQMFWSYQRQ EIEHVNDFKN HQLPLARIKK IMKADEDVRM ISAEAPILFA KACELFILEL 120 TIRSWLHAEE NKRRTLQKND IAAAITRTDI FDFLVDIVPR DDIKDDAAAL GGIVAAAAAA 180 TASGVPYYYP PMGQPAGPPG GMMIGRPAVD PATGVYVQPP SQAWQSVWQT AAEDGSYGSG 240 ATAAQGNLDG QREKMVISLH FSGWRMEGEL VMLSKDVTGL SFMCCGCDAL LSKALAWTLP 300 AC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	3e-54	68	160	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	138	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.3GN04

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015937880.1	0.0	nuclear transcription factor Y subunit C-1
Swissprot	Q9SMP0	1e-107	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A0A445C223	0.0	A0A445C223_ARAHY; Uncharacterized protein
STRING	XP_008464428.1	1e-120	(Cucumis melo)
STRING	XP_004138046.1	1e-120	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11071	30	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	1e-79	nuclear factor Y, subunit C4

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]