PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.1J52S
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 846aa    MW: 97893.4 Da    PI: 6.2462
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.1J52SgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.34.4e-22106196290
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  fYn YAk+ GF  rk++ +++  ++  t+++fvC ++g+re   +k   e++r++++etr+gC a+++v+++  +g+w ++ +++ HnHe+ 
  Aradu.1J52S 106 FYNLYAKMNGFAARKTRLRQN-AKKLATQQQFVCFRQGFREFAADKeaYERKREPKPETRCGCLAQMRVHLHLeSGRWIISYFDNVHNHEML 196
                  9****************9999.56669*************97666645799999*****************998***************985 PP
2FAR170.93e-22334424290
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  fYn YAk+ GF  rk++ +++  ++  t+++fvC ++g+re   +k   e++r++++etr+gC a+++v+++  +g+w ++ +++ HnHe+ 
  Aradu.1J52S 334 FYNLYAKMNGFAARKTRLRRN-AKKLATQQQFVCFRQGFREFAADKeaYERKREPKPETRCGCLAQMRVHLHLeSGRWIISYFDNVHNHEML 424
                  9*******************9.55669*************97666645799999*****************998***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-19106196IPR004330FAR1 DNA binding domain
PfamPF031011.1E-19334424IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.878579615IPR007527Zinc finger, SWIM-type
SMARTSM005750.0022590617IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
MEEEDVASLV HGAPAMADEV SFVGNEEELV SDEPYVCVGD EPSSEASEDA NMDGYCGYND  60
GDDFYESWED RGIDGIADFG RINFKEISFD EMRLLHFPDR HVAFAFYNLY AKMNGFAARK  120
TRLRQNAKKL ATQQQFVCFR QGFREFAADK EAYERKREPK PETRCGCLAQ MRVHLHLESG  180
RWIISYFDNV HNHEMLDGTL TFMLPGHRKM NSTAIEQMNM MLRNFIVRME EEDVASLVHG  240
APAMADEVSF VGNEEELVSD EPYVCVGDEP SSEASEDANM DGYCGYNDGD DFYESWEDRG  300
IDGIADFGRI NFKEISFDEM RLLHFPDRHV AFAFYNLYAK MNGFAARKTR LRRNAKKLAT  360
QQQFVCFRQG FREFAADKEA YERKREPKPE TRCGCLAQMR VHLHLESGRW IISYFDNVHN  420
HEMLDGTLTF MLPGHRKMNS TAIEQMNMMK MWATAHIHGH FFGGFRTTSR CEGLHSMLGK  480
FVHSRHNLRN FVEQYFRCVS EMRSREAQSD MHSVVGHLVL QSPLHDLERS AAKLLTKEIF  540
ILFRPMLSRA CTLKVRSCTL TPTSDIYTIS RWGNSHNYWH VSHYPEDSIF KCSCLRMESL  600
GIPCDHIVAL LVHLDFTEIP TSLVLERWSK NARSKMRQYV EKGPFSWDSM VSCRNWMLND  660
LCREMCVLAS VREDKFETMT EKIRSEINRL KHDTEAGPST PAVVGQSSTL EGCVQNPLVV  720
RRKKRPKRDS VNRTLVRGVR RCSICHRVGH NRTSCQSNVW QGQRQQPSHE EDVDEDNYYT  780
PNFGEEVDEY AHYHSQPVGQ EEHFGRYEEE FQYSCHVEIF VASPNMRLFC YVKANLSCFV  840
TNCEAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1721728RKKRPKRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.1J52S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015966466.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445E1N80.0A0A445E1N8_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3613639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-17FAR1-related sequence 5