PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.18TLF | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | LBD | ||||||||
Protein Properties | Length: 156aa MW: 17195.6 Da PI: 8.3916 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 91.7 | 8.4e-29 | 2 | 102 | 1 | 95 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf......paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C++C+vlr++C+++C+l+ ++ p +q ++ +v+k+FG++n++++l+++p+++r+++++sl+yeA r+ +Pv+Gavg++++++++l+q+++ Aradu.18TLF 2 SCNGCRVLRKGCSEECMLRHCLvwiqdnPRAQGYATLFVAKFFGRANLMSFLSSVPTNHRSALFQSLLYEAVGRTINPVSGAVGLLSTGNWHLCQSAV 99 6*************************999999***************************************************************998 PP DUF260 93 ela 95 + + Aradu.18TLF 100 DKV 102 765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.53 | 1 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.6E-25 | 2 | 99 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MSCNGCRVLR KGCSEECMLR HCLVWIQDNP RAQGYATLFV AKFFGRANLM SFLSSVPTNH 60 RSALFQSLLY EAVGRTINPV SGAVGLLSTG NWHLCQSAVD KVLRGGGAAL TESSDHLKEA 120 ESEERIESKK QPPSNTTTTH HWPSQTTDTK LLTLFL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.18TLF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015941790.1 | 1e-114 | LOB domain-containing protein 38 isoform X1 | ||||
Swissprot | Q9SN23 | 7e-52 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A445BF48 | 1e-111 | A0A445BF48_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA20G26910.1 | 8e-63 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 5e-54 | LOB domain-containing protein 38 |