PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.0GH1S
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family SBP
Protein Properties Length: 341aa    MW: 37540.3 Da    PI: 8.4198
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.0GH1SgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.65.6e-41174251178
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  +CqvegC  dl +ak+yhr+h+vCe hsk+p+v+++gle+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+++
  Aradu.0GH1S 174 CCQVEGCGLDLLSAKDYHRKHRVCENHSKSPKVVIAGLERRFCQQCSRFHGLSEFDENKRSCRRRLSDHNARRRKPHP 251
                  6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.9E-34167236IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.453172249IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-38173254IPR004333Transcription factor, SBP-box
PfamPF031108.4E-32175248IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MXXEWNAKSP SQWEWEHLFF SNAKVTENPK LQPPPDWSGE ANGETNVGLL DNSGGSGCSE  60
SELMNPSSSR SSKSASINSS SNRDSKTSIF TLESSQDDSS GKKEELVENS HSHEAPPGSG  120
EPLLTLKLGK RLYFEDVCPG SDAKKNQSSS GAPIQAVSSG KKSKSNAQNM QYPCCQVEGC  180
GLDLLSAKDY HRKHRVCENH SKSPKVVIAG LERRFCQQCS RFHGLSEFDE NKRSCRRRLS  240
DHNARRRKPH PETVQLNPSD LTPSPFAVGR QQISPFTCTT SGAANTVWQD MRRSKQLPQT  300
KDFLLKAVKG NNEIPSIVSM VTEDNSKGIA FASKTLILLT D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-281752481184squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.0GH1S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3122230.0KF312223.1 Arachis hypogaea squamosa promoter-binding-like protein (SPL2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025691686.10.0squamosa promoter-binding-like protein 10 isoform X4
RefseqXP_025691687.10.0squamosa promoter-binding-like protein 12 isoform X5
RefseqXP_025691688.10.0squamosa promoter-binding-like protein 12 isoform X5
RefseqXP_025691689.10.0squamosa promoter-binding-like protein 12 isoform X5
TrEMBLA0A0K0KCL40.0A0A0K0KCL4_ARAHY; Squamosa promoter-binding-like protein
STRINGXP_007163771.11e-138(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46303058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.35e-59squamosa promoter binding protein-like 2