PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.07E2R | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | LBD | ||||||||
Protein Properties | Length: 195aa MW: 21054.1 Da PI: 7.4773 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 89.7 | 3.7e-28 | 11 | 109 | 1 | 94 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C++ C+l+ ++ p++q++++ +++k+FG+s + ++++++p+++r+++++sl+yeA+ r+ +Pv+Gavg++++++++l++++ Aradu.07E2R 11 SCNGCRVLRKGCSDMCPLRTCLhwipsPQAQAHATLFLAKFFGRSDLFSFISSVPHNNRPELFQSLLYEACGRTINPVNGAVGLLSTGNWHLCEAALR 108 6************************999999**************************************************************98765 PP DUF260 94 l 94 + Aradu.07E2R 109 T 109 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.87 | 10 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-24 | 11 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MTRVGPHSEM SCNGCRVLRK GCSDMCPLRT CLHWIPSPQA QAHATLFLAK FFGRSDLFSF 60 ISSVPHNNRP ELFQSLLYEA CGRTINPVNG AVGLLSTGNW HLCEAALRTV LAGGVLTALP 120 EEVIMPVLDD SSASHAALHF NNTSLSEASK RRSVSGVSTP PAVSVVSGEP SEMTLMSFDD 180 GICSHNQRKL LNLFV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.07E2R |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015935210.1 | 1e-143 | LOB domain-containing protein 38 | ||||
Refseq | XP_025613537.1 | 1e-143 | LOB domain-containing protein 38 | ||||
Swissprot | Q9SN23 | 2e-54 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A445BUP9 | 1e-141 | A0A445BUP9_ARAHY; Uncharacterized protein | ||||
STRING | XP_010092590.1 | 2e-63 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 8e-57 | LOB domain-containing protein 38 |