PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.05H52 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C2H2 | ||||||||
Protein Properties | Length: 488aa MW: 54058.1 Da PI: 9.1051 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.6 | 9.3e-05 | 60 | 82 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F r nL+ H r H Aradu.05H52 60 FVCEICLKGFQRDQNLQLHRRGH 82 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.8 | 0.00036 | 136 | 158 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Aradu.05H52 136 WKCDKCSKRYAVQSDWKAHSKTC 158 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.02E-5 | 59 | 82 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.9E-4 | 59 | 82 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.305 | 60 | 82 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 62 | 82 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.3E-4 | 124 | 157 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.02E-5 | 131 | 156 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 488 aa Download sequence Send to blast |
MDDGEVSNAA FPLHHNNQTH HPTSNNPPPL KRKRNLPGNP DPEAEVIALS PKTLMATNRF 60 VCEICLKGFQ RDQNLQLHRR GHNLPWKLKQ RTTKEVRKRV YVCPEKSCVH NHPSRALGDL 120 TGIKKHFCRK HGEKKWKCDK CSKRYAVQSD WKAHSKTCGT REYKCDCGTI FSRRDSFITH 180 RAFCDALAEE TARVNAASTI NHTLLGANNI AYTLMQQQNH HPLVPNNMST HFSSIFKPIS 240 SSTTDEISSN SQTSSRPLSL WNMGHHPHDT TTIMPITHNN LHDIHHQIGF ATNPPPPSIW 300 MFGNKHPSNG SQQEIITSTT SANSLPLMNI VKNNNNNNNS NNNNNNNHVA NQLVSVPSLY 360 STQHQSHDHD QTTTTSSSAA NMSATALLQK AAQIGSTSST DPSSFLGSIG LKCSNNNNQG 420 QDGNNKFCGI YSSSWSEPES STGDLTQMPP TKRMRVQNED GSAGGQTRDF LGVGVQTICH 480 PSSITGWI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-34 | 132 | 201 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 1e-34 | 132 | 201 | 3 | 72 | Zinc finger protein JACKDAW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00125 | DAP | Transfer from AT1G03840 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.05H52 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015936325.1 | 0.0 | zinc finger protein NUTCRACKER | ||||
Swissprot | Q9ZWA6 | 1e-147 | IDD3_ARATH; Zinc finger protein MAGPIE | ||||
TrEMBL | A0A445BXI4 | 0.0 | A0A445BXI4_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA13G36960.1 | 0.0 | (Glycine max) | ||||
STRING | XP_007149800.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4626 | 29 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 1e-138 | C2H2 family protein |
Publications ? help Back to Top | |||
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