PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco026820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MYB_related | ||||||||
Protein Properties | Length: 260aa MW: 29277.1 Da PI: 7.141 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.2 | 1.6e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l +++ +G g+W++++r g+ R++k+c++rw +yl Aco026820.1 14 RGLWSPEEDEKLRKYISTYGHGCWSSVPRLAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-26 | 6 | 71 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.808 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.84E-23 | 14 | 100 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.88E-12 | 17 | 61 | No hit | No description |
SMART | SM00717 | 7.3 | 66 | 101 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-8 | 79 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.786 | 79 | 99 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MGHHSCCNKQ KVRRGLWSPE EDEKLRKYIS TYGHGCWSSV PRLAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SHQEETLIIA KHLPGRTDNE VKNFWNSTIK KKLISHAVDG LNLIPSPDSY 120 YIPDGVATTR GYDGQCMAGY AVETTIAPSI TRAHLYGSLW PSNPQQFNLL DCDRQNVKDY 180 STLNFCSENT INTLLTETKC ADVKLVDGYD QPIEIEKCTV PLLSASNEID PNAHVSAYFR 240 AQPCVSDLLQ ESIGPGDFFD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-19 | 14 | 103 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020080624.1 | 0.0 | myb-related protein 330-like isoform X1 | ||||
Refseq | XP_020098119.1 | 0.0 | myb-related protein 330-like isoform X2 | ||||
TrEMBL | A0A199VPE2 | 1e-120 | A0A199VPE2_ANACO; Transcription factor MYB26 | ||||
STRING | XP_008775155.1 | 1e-91 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12813 | 30 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13890.2 | 1e-62 | myb domain protein 26 |
Link Out ? help Back to Top | |
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Phytozome | Aco026820.1 |