PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aco025362.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 261aa MW: 28115 Da PI: 10.142 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.9 | 7.5e-13 | 73 | 118 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+e+ErrRR+riNs +++Lr ++P a K++Ka+ L k+v+ +k+L Aco025362.1 73 IHSEAERRRRERINSHLSTLRCMIPDA-----HKMDKASLLSKVVDQVKDL 118 59************************9.....7*************99988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.364 | 69 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-13 | 73 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-10 | 74 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-13 | 74 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-11 | 75 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 8.0E-5 | 160 | 208 | No hit | No description |
PROSITE profile | PS51671 | 8.902 | 160 | 238 | IPR002912 | ACT domain |
CDD | cd04873 | 1.22E-7 | 161 | 227 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence Send to blast |
MAKCYASTDE GKQVVVSFPS LYKGSLILPR PTTAATTTTT TTTPRPLLRS GSPSCSSASS 60 SSSSVAAARA SKIHSEAERR RRERINSHLS TLRCMIPDAH KMDKASLLSK VVDQVKDLKR 120 KANDTSKTVN VPPEIDEVTV ERHKGGRDHT FSGDETLRMR VSVTCDDRPD LFASLIQAFH 180 KLRLRTIRAD ITCIGGRVQN VFILCGTGEG SENMCLGSLK ECLKEALAKA ASPEVLLSSS 240 SSSSSSSSFS SKRQRLLGSH * |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 77 | 82 | ERRRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020102609.1 | 0.0 | transcription factor bHLH30-like | ||||
TrEMBL | A0A2H3Y3J8 | 3e-74 | A0A2H3Y3J8_PHODC; transcription factor bHLH51-like | ||||
STRING | XP_008792668.1 | 5e-75 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3347 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40200.1 | 2e-30 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Aco025362.1 |