PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco022238.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

LBD

Protein Properties

Length: 326aa MW: 34665.8 Da PI: 6.6541

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco022238.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99.1	4.2e-31	4	106	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C++dC ++p++ p++q++++ +++k++G++ +++l++a p + r+++++sl+yeA+ r+ +P+yG+vg+++++++q++q+++e Aco022238.1 4 SCNGCRVLRKGCTEDCSIRPCLqwiknPESQANATLFLAKFYGRAGLINLINAGPAHLRPAIFRSLLYEACGRIANPIYGSVGLLWSGNWQVCQSAVE 101 6************************************************************************************************9 PP DUF260 94 lallk 98 ++l + Aco022238.1 102 AVLKG 106 98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.322	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.6E-25	4	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MRMSCNGCRV LRKGCTEDCS IRPCLQWIKN PESQANATLF LAKFYGRAGL INLINAGPAH 60 LRPAIFRSLL YEACGRIANP IYGSVGLLWS GNWQVCQSAV EAVLKGAPVK PIPSVESAAA 120 PLLSPSPPPL ITTAAAAAAN NKPNNNYNDI RHVSKNTKNH HPQAAELLRV SAKTRARFKR 180 SAGAKPCAAP ARGPISDCRQ RRPQSPDSSA SRASDDDENG AAPRADDDVE FRESDRLSVD 240 TVEAGSHVSQ AEPSPAVEGG ADQEDETEEE AEEAAAVGLE LTLGLEPVSA TTRPPRRSSA 300 TETRCELSAF TSDSFRLDLG LQLSA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020106187.1	0.0	LOB domain-containing protein 42-like
TrEMBL	A0A199V7X4	0.0	A0A199V7X4_ANACO; LOB domain-containing protein 41
STRING	XP_008799243.1	1e-95	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	3e-72	LOB domain-containing protein 41

Link Out ? help Back to Top
Phytozome	Aco022238.1