PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco021134.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 378aa    MW: 42152.1 Da    PI: 6.511
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco021134.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.41.4e-1282154147
                      TSSS-HHHHHHHHHHHHHTTTT...........................-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...........................tWktIartmgkgRtlkqcksrwqky 47 
                      rg+++++E++ ++ +++ lG+                            +W+ Ia+ ++ gRt++++k++w++ 
      Aco021134.1  82 RGSFSQQEEDSIIALHEILGNSlaamtsarslpqfafmfgvkfrffrvfRWSQIASQLP-GRTDNEIKNYWNSC 154
                      899********************************************************.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-74272IPR009057Homeodomain-like
PROSITE profilePS500905.4714572IPR017877Myb-like domain
SMARTSM007172.1E-1149157IPR001005SANT/Myb domain
SuperFamilySSF466896.12E-135080IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-2273159IPR009057Homeodomain-like
PROSITE profilePS5129414.0477159IPR017930Myb domain
PfamPF002493.2E-1082154IPR001005SANT/Myb domain
CDDcd001675.16E-684152No hitNo description
SuperFamilySSF466896.12E-13128156IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MAGLDTRRAG FRWVPRPVHA FDAFSHRDNS DRCIARMGRH SCCLKQKLRK GLWSPEEDEK  60
LYNHIIRHGV GWINYLRPDL KRGSFSQQEE DSIIALHEIL GNSLAAMTSA RSLPQFAFMF  120
GVKFRFFRVF RWSQIASQLP GRTDNEIKNY WNSCLKKKLR QRGIDPSTHK PLPSDAPEAE  180
AQERKPVLDN AGRIVVAAPP LEHFLTKPAF DPFPLTEFHD PSAIISASLY YSNQLQQTFR  240
ALDQDGAAPG SGLCDYSSAV DVSENYGCYG ESSSNSSNWN CNRGAEGNNV IESEGLIWAS  300
DSKMESFGQI HLSGEEMFEN KFSAEDYSSS MMGSLSRDNS DAAFDVSQAA ALANFLNLSA  360
AEDYSLFPYL SGKSGRI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154160LKKKLRQ
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020105478.10.0myb-related protein Hv33-like
RefseqXP_020105479.10.0myb-related protein Hv33-like
SwissprotP200272e-60MYB3_HORVU; Myb-related protein Hv33
TrEMBLA0A199V7201e-158A0A199V720_ANACO; Myb-related protein Hv33
STRINGXP_008792804.11e-97(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.13e-52myb domain protein 86