PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco020034.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

LBD

Protein Properties

Length: 231aa MW: 24497.1 Da PI: 8.8823

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco020034.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	91.3	1.2e-28	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C+++C+++ ++ p++q++++ +++k++G++ +l+l+++ p + r+ +++sl+yeA+ r+ dPv G+vg+++++++ql+q+++e Aco020034.1 2 SCNGCRVLRKGCSAGCAIRSCLqwirsPNSQANATVFLAKFYGRAGLLNLISSCPLHLRSSIFQSLLYEACGRVLDPVCGSVGLLWSGNWQLCQAAVE 99 6***********************************************************************************************99 PP DUF260 94 lall 97 ++l Aco020034.1 100 AVLK 103 9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.321	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.8E-23	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MSCNGCRVLR KGCSAGCAIR SCLQWIRSPN SQANATVFLA KFYGRAGLLN LISSCPLHLR 60 SSIFQSLLYE ACGRVLDPVC GSVGLLWSGN WQLCQAAVEA VLKGVPITRT PATLSGGGVP 120 PLKTYDIRHV AKNTDRLGAA AKSRSRFKRS GSARRKPEVE LVDWTEFHPA EPSHESDRES 180 DSKGGPVGSA DGSHVSQAEP IRAKLVLGVE ENCGVALDLS LSLLTAVQPA *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP002538	5e-38	AP002538.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0408F06.
GenBank	AP014957	5e-38	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	FP100502	5e-38	FP100502.1 Phyllostachys edulis cDNA clone: bphyem111j02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020097907.1	1e-168	LOB domain-containing protein 41-like
Swissprot	Q9M886	4e-68	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A199UR39	1e-166	A0A199UR39_ANACO; LOB domain-containing protein 41
STRING	EOY00179	2e-74	(Theobroma cacao)
STRING	XP_008799243.1	5e-74	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	2e-70	LOB domain-containing protein 41

Link Out ? help Back to Top
Phytozome	Aco020034.1