PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco017173.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family CAMTA
Protein Properties Length: 1016aa    MW: 113873 Da    PI: 7.0475
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco017173.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1176.63.2e-55201353117
         CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 
                  +e k+rwl+++ei++iL n+++++l ++++ +p  gsl+L++rk +ryfrkDG++w+kkkdgktvrE+hekLK g+v+vl+cyYah+een++fqrr+y
  Aco017173.1  20 QEaKTRWLRPSEICEILRNYKRFKLNADPPYKPAGGSLFLFDRKALRYFRKDGHNWRKKKDGKTVREAHEKLKCGSVDVLHCYYAHGEENENFQRRSY 117
                  5559********************************************************************************************** PP

         CG-1 100 wlLeeelekivlvhylev 117
                  wlL+e+l++ivlvhy++v
  Aco017173.1 118 WLLDEQLDHIVLVHYRDV 135
                  ****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143778.59915141IPR005559CG-1 DNA-binding domain
SMARTSM010764.0E-7618136IPR005559CG-1 DNA-binding domain
PfamPF038591.5E-4921135IPR005559CG-1 DNA-binding domain
CDDcd001026.79E-5438523No hitNo description
PfamPF018331.7E-5439516IPR002909IPT domain
Gene3DG3DSA:2.60.40.101.2E-6439515IPR013783Immunoglobulin-like fold
SuperFamilySSF812968.05E-16439523IPR014756Immunoglobulin E-set
SuperFamilySSF484039.95E-17616733IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.945627732IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.0E-16627734IPR020683Ankyrin repeat-containing domain
CDDcd002041.80E-13632730No hitNo description
SMARTSM002480.024671700IPR002110Ankyrin repeat
PROSITE profilePS5008810.125671703IPR002110Ankyrin repeat
SMARTSM002481100710739IPR002110Ankyrin repeat
SuperFamilySSF525401.33E-9774901IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000155.7849871IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.736850879IPR000048IQ motif, EF-hand binding site
PfamPF006120.0094852870IPR000048IQ motif, EF-hand binding site
SMARTSM000156.9E-4872894IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.853873901IPR000048IQ motif, EF-hand binding site
PfamPF006125.8E-5875894IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.943955983IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1016 aa     Download sequence    Send to blast
MAEARRFALN PQLDIPQILQ EAKTRWLRPS EICEILRNYK RFKLNADPPY KPAGGSLFLF  60
DRKALRYFRK DGHNWRKKKD GKTVREAHEK LKCGSVDVLH CYYAHGEENE NFQRRSYWLL  120
DEQLDHIVLV HYRDVNEGSR PTFSHLSNTE QNRVNHMEET QASTFTHLSP STFTSQTSYV  180
SSPSAADWSG QAPSSELEDA DSGEELGGAS ASHTDSVSCP GFQFASLPGD TAVKDGIVSL  240
QNTTIGVKQQ ISGAPQGSFC ENDHNSAASK WVNMTKKDVD MKEQNISFEP TGHSGDISRR  300
VIDDHTVLNS TLDDTFNMLR NAQLEILIGN GDRENQGADD QSLEYPTKVS YPLKNNRDTN  360
MHNNEHGDLK KLDSFGRWMS KEIGKDCDDS LMASDSGSYW NTLDTQSDDK EVSTSLPPHM  420
QLDIDTLGPS LSQEQLFSIL DFSPDWAYSN VETKVLISGR FLGNVDPGSV KWCCMFGEHE  480
VPAEILTAGV LRCKTPAHPP GRVPFYVTCS DRLARSEVRE FEFCENPSAT HLLPKSEAEE  540
LHLQIRFAKL LSVGTDKKLL CSVENCLKCK VKQRLSSLLK DDEKQWAEVE MCTKAERRYY  600
YNVRNKLIEN LLKGKLYEWL VCKAHKEDGR GPNILDEEGQ GAIHLAAALG YDWAMDPIVA  660
CGINPSFRDL HGRTGLHWGA YYGREEVVAA LVRLGVDPGA VEDPTSTSPQ GLTAADLASA  720
RGHKGIAGFL AEAHLTSHLS SLALKKKVGN SVSATLAAEK TTVEAAEDQN IVFLNDNNIE  780
EQLSLRGSLD ALRKSTEAAA RIHTAFRVQS FIQRQSTEKK DEDSWILDEA VLSTLNNRFQ  840
KLGHFNEALH AAAAVKIQQK YRGWKGRREF LKIRNKIVKI QAHVRGHQVR KQYRKIVWSV  900
SIVEKLILRW RRKGAGLRGF QADRAISSTS KQEDGKSDEY EFLRVGRKQK EAGVEKALAR  960
VQSMARNPEA RDQYMRLVAS SHKSKLGDGE SSSSQIQSSE EEKMVDKDQP ASMIH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020108288.10.0calmodulin-binding transcription activator 3-like isoform X2
TrEMBLA0A2H3Y4H50.0A0A2H3Y4H5_PHODC; calmodulin-binding transcription activator 1-like
STRINGXP_008793313.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1