PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco016520.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 270aa    MW: 30360.5 Da    PI: 5.1904
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco016520.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.96.5e-1556100147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++++E++l++ ++  lG++ W+ Ia+ ++ gRt++++k++w++ 
      Aco016520.1  56 RGSFSQQEEDLIISLHGILGNR-WSQIASQLP-GRTDNEIKNFWNSC 100
                      899*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.6321050IPR017877Myb-like domain
SuperFamilySSF466894.69E-231397IPR009057Homeodomain-like
SMARTSM007173.4E-41452IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-131657IPR009057Homeodomain-like
PROSITE profilePS5129424.9251105IPR017930Myb domain
SMARTSM007171.6E-1455103IPR001005SANT/Myb domain
PfamPF002491.1E-1356100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-2658106IPR009057Homeodomain-like
CDDcd001671.50E-95898No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MRHDSRCLRQ QKLRKGLWSP EEDEKLYNHI SRFGLQRCGK SCRLRWINYL RPDLKRGSFS  60
QQEEDLIISL HGILGNRWSQ IASQLPGRTD NEIKNFWNSC LKKKLVQQGV DPATHMPLNE  120
TLGSREGKLE PNNSNNVGSS AHLAATAVFD PFPFGAISDQ SASNLTIYSQ LENSQICDFN  180
SAIDISENYG YGKSSSDSSS WNCNVGSEMN NALNWAASDI RREETFEYNV ENGEDYNGYP  240
IGSLSRHLSE NCFELSQGEL ASEFDVGLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26131055108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020098210.10.0myb-related protein Hv33-like isoform X1
SwissprotP200271e-68MYB3_HORVU; Myb-related protein Hv33
TrEMBLA0A199W1Y00.0A0A199W1Y0_ANACO; Myb-related protein Hv33 (Fragment)
STRINGGSMUA_Achr9P22190_0011e-100(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G57560.14e-62myb domain protein 50