PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco015637.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 362aa    MW: 39779.2 Da    PI: 7.8568
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco015637.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.26.9e-06193212120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++Cp C+k+F+r  n++ H+
  Aco015637.1 193 FSCPVCSKTFNRYNNMQMHM 212
                  89*****************9 PP
2zf-C2H214.50.0001277299123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C +Cgk F  + + ++H +++
  Aco015637.1 277 FMCRKCGKAFAVRGDWRTHEKNC 299
                  89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.39E-5189215No hitNo description
PROSITE profilePS5015710.242193220IPR007087Zinc finger, C2H2
SMARTSM003550.054193215IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.5E-6193212IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280195215IPR007087Zinc finger, C2H2
PROSITE profilePS508688.004235251IPR003616Post-SET domain
SuperFamilySSF576671.7E-6258297No hitNo description
Gene3DG3DSA:3.30.160.601.0E-5273297IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808277297IPR007087Zinc finger, C2H2
SMARTSM0035549277297IPR015880Zinc finger, C2H2-like
SMARTSM00355160303326IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MADPYTNFFK GYFHPKNPFS SSSSTTSPSP LPLPQSPPPS PPLREALPLL TLSPTNHHHH  60
HHHQEEEDNT SCSAFEGGGD HHNTEKEKGG GGGGGGGGGL GCSNSSNNNN GGNNYEEGVT  120
VALHIGLPTP GAADLISRVS SSTSVDDDSS KMEGEEDAMD GTIPLGYPTI GRLTKGQYWI  180
PTPSQILIGP TQFSCPVCSK TFNRYNNMQM HMWGHGSQYR RGPESLRGTQ PTAMLRLPCY  240
CCAPGCRNHI DHPRSKPLKD FRTLQTHYKR KHGIKPFMCR KCGKAFAVRG DWRTHEKNCG  300
KLWYCVCGSD FKHKRSLKDH VRAFGHGHAA YGIDCFAAED DDDEPSSEIE QDCNHRRHRS  360
R*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020109079.10.0zinc finger protein WIP2-like
SwissprotQ9SVY11e-127ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A199VH580.0A0A199VH58_ANACO; Zinc finger protein WIP2
STRINGXP_008798774.11e-167(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-121C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]