PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012990.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C3H
Protein Properties Length: 728aa    MW: 81370.1 Da    PI: 5.5089
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012990.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.7e-07118140427
                  ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  ++C +f++ G C  Gd+C F+Hgp
  Aco012990.1 118 VPCYYFQK-GNCMKGDKCLFMHGP 140
                  79******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.9152049IPR000571Zinc finger, CCCH-type
PfamPF156636.6E-112175No hitNo description
SMARTSM003560.00232148IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.4465177IPR000571Zinc finger, CCCH-type
SMARTSM003564.55376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5113140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.45E-6114139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.798114141IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-6114140IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-4117140IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MESAAEREGV RPLTAEEEAL KRNTDCVYFL ASPLTCKKGS ECEYRHSDGA RVNPRDCWYW  60
FNGSCLNSKC SFRHPPLDGL FGGPPTSGPT PPPPSQAPAS AQGTAPHFPP YNTNKQSVPC  120
YYFQKGNCMK GDKCLFMHGP QAAANPNPQQ SAKVPIASTE PPQSQKKDSW GIKECQQQNV  180
PTQQSAAITS ADKPKANIDK PAVHVDKPKV NVEEPAVAPP TSAKAFIKAE GASHNVQPVK  240
KSLPPYLPDD DLPEFDHNYL AAGKGYVQQR RSRSHQVQHL DDRAQNGNRD ADEFLGESSP  300
GFDVLVDNED EDSGYLHNED NFAGPLVNPI DDYDYHRSEY ELAVKDERDR YNEMAMYDRL  360
GRAHGNYELD RFRASPERLS VRERRLLHRE ADREEIGGSD LRHRLTKQRR LNGSRSALSP  420
DGRGEHYRRE KQYPGERRRD HHSRRNHDHP QRESSISTRL QGRIRLPRRS SPDRADLKER  480
DRGRPRGRVS PVRPVDLHSR HQERTRKISE EFTTDGRNLG GRLGKRDEVQ SVNFPGPKSL  540
AELKGGKAVE SSQEQPAKGT TSASKEQLRE PVGSLGFEGP KPLSVILKRK REAALGNGES  600
SGVRKEDVER DAGTHEKGGE QEMGSTLEVH KVGTVEEEEE EGLIPSDGED INYDGKSSAK  660
GDMVEAEDGV DAIEDQELEN YDQRDGESDY EAMEGGDYKV EENAYPEDDD DLDDEDDFAR  720
KVGVMFS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020079644.10.0zinc finger CCCH domain-containing protein 32-like isoform X1
TrEMBLA0A199VKB30.0A0A199VKB3_ANACO; Zinc finger CCCH domain-containing protein 32
STRINGXP_008804174.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66043241