PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco012458.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | NF-YB | ||||||||
Protein Properties | Length: 212aa MW: 22311.9 Da PI: 6.9352 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 176.5 | 2.6e-55 | 26 | 118 | 1 | 93 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 vreqdrflPian+srimkk +Pan+ki+k+aketvqecvsefisfvtseasdkcqrekrktingddllwa+atlGfedy+eplk+yl+kyre Aco012458.1 26 VREQDRFLPIANLSRIMKKGIPANGKIAKEAKETVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKLYLQKYREG 118 69*****************************************************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.7E-51 | 23 | 123 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.79E-37 | 29 | 119 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.9E-26 | 32 | 96 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.4E-22 | 60 | 78 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 63 | 79 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.4E-22 | 79 | 97 | No hit | No description |
PRINTS | PR00615 | 1.4E-22 | 98 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MADAPASPGG GGSHESGGDG SPRSNVREQD RFLPIANLSR IMKKGIPANG KIAKEAKETV 60 QECVSEFISF VTSEASDKCQ REKRKTINGD DLLWAMATLG FEDYIEPLKL YLQKYREGDS 120 KLGAKGGDGS IKKDGGVLLL GGAQQGSSTQ GSTRTLQSRH ELHATSVTGD GSLFAEGAEL 180 LGHSYQARPD PTSMAFASGS PLYSCSRNLV G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n1j_A | 5e-48 | 27 | 117 | 3 | 93 | NF-YB |
4awl_B | 5e-48 | 27 | 117 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 5e-48 | 27 | 117 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020102064.1 | 1e-106 | nuclear transcription factor Y subunit B-like isoform X2 | ||||
Swissprot | Q8VYK4 | 3e-75 | NFYB8_ARATH; Nuclear transcription factor Y subunit B-8 | ||||
TrEMBL | A0A199UVY2 | 1e-137 | A0A199UVY2_ANACO; Nuclear transcription factor Y subunit B-8 (Fragment) | ||||
STRING | XP_009620316.1 | 2e-78 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53340.1 | 3e-61 | nuclear factor Y, subunit B10 |
Link Out ? help Back to Top | |
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Phytozome | Aco012458.1 |
Publications ? help Back to Top | |||
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