PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco012432.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

NF-YB

Protein Properties

Length: 291aa MW: 29780.6 Da PI: 4.2404

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco012432.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	183.2	2.1e-57	67	162	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 reqdrflPianvsrimkk+lPanakisk+aketvqecvsefisf+t+easdkcqrekrkt+ngddllwa++tlGfedyv+plk+yl+k+re+eg+k Aco012432.1 67 REQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTVNGDDLLWAMTTLGFEDYVDPLKLYLQKFREIEGDK 162 89********************************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.2E-52	63	166	IPR009072	Histone-fold
SuperFamily	SSF47113	3.42E-39	69	166	IPR009072	Histone-fold
Pfam	PF00808	2.6E-27	72	136	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.4E-20	100	118	No hit	No description
PROSITE pattern	PS00685	0	103	119	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.4E-20	119	137	No hit	No description
PRINTS	PR00615	3.4E-20	138	156	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MHPPRICFFP NSTYVNPNWA AAAAVEGISG ICLGINYKGG ILEGDMAESD NESGGGGSNA 60 SSSAAAREQD RFLPIANVSR IMKKALPANA KISKEAKETV QECVSEFISF ITGEASDKCQ 120 REKRKTVNGD DLLWAMTTLG FEDYVDPLKL YLQKFREIEG DKAGTVTGGI GAGAGAGAGE 180 REYDGDDDDG GGGGGGGVVE LYLQKFREIE GDKAGTVTGG IGAGGGGGGG GVPATANSQP 240 SQKEGADVWV FFLSASSSES VSASASASAS DGDGDGDGGW ECWRIFSSRD *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	4e-47	62	157	2	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB288040	1e-106	AB288040.1 Oryza sativa Japonica Group OsHAP3I gene for HAP3 subunit of HAP complex, complete cds.
GenBank	AC120529	1e-106	AC120529.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 3 clone OSJNBa0039N21, complete sequence.
GenBank	AK060225	1e-106	AK060225.1 Oryza sativa Japonica Group cDNA clone:001-002-G06, full insert sequence.
GenBank	AP014959	1e-106	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	EU956383	1e-106	EU956383.1 Zea mays clone 1561739 nuclear transcription factor Y subunit B-3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A199VJ12	3e-70	A0A199VJ12_ANACO; Nuclear transcription factor Y subunit B-3

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	1e-62	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	Aco012432.1