PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco011677.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 191aa MW: 21248.8 Da PI: 6.7979 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 29.3 | 1.1e-09 | 10 | 56 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i +k nr + fskRr+g++KKA+ L + ++av+ f ++g+ + y Aco011677.1 10 PIIDKHNRFICFSKRRAGLFKKANQLAR-RGFQIAVLAFTESGNAFAY 56 6889********************9985.6788888888888876655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 16.512 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.1E-12 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.54E-17 | 2 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-6 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.0E-11 | 11 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-6 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MGRRKIKIEP IIDKHNRFIC FSKRRAGLFK KANQLARRGF QIAVLAFTES GNAFAYGSPK 60 VEEVVERFLH NSDATDGAGS SKATESLIKA PEDCKEQEQT EKVSSESAES AQQKDVSRET 120 KERAEDGEDS WNSLSSALTE SKHFWWNSSV ENLSLKNLLQ FKSALEALLT SVRIKADSLL 180 VEQDFLAGFT * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020094012.1 | 1e-137 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A199VNG3 | 1e-133 | A0A199VNG3_ANACO; Agamous-like MADS-box protein AGL29 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7829 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 9e-21 | AGAMOUS-like 29 |
Link Out ? help Back to Top | |
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Phytozome | Aco011677.1 |