PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco011352.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NAC
Protein Properties Length: 368aa    MW: 41390.2 Da    PI: 8.8241
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco011352.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.24.1e-50251502128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                  +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + +++++ 
  Aco011352.1  25 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAFAAIGEKEWFFYVPRDRKYRNGDRPNRVTASGYWKATGADRMIRAENSRS 121
                  79***************************.89***************8777899******************************************** PP

          NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                  +glkktLvfy+g+apkg +t+W+m+eyrl
  Aco011352.1 122 IGLKKTLVFYSGKAPKGIRTSWIMNEYRL 150
                  ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100555.71424171IPR003441NAC domain
SuperFamilySSF1019412.62E-5624170IPR003441NAC domain
PfamPF023656.5E-2526150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
RYAAIGSTMS GDDDGKDAHE NDLVMPGFRF HPTEEELIEF YLRRKVEGKR FNVELITFLD  60
LYRYDPWELP AFAAIGEKEW FFYVPRDRKY RNGDRPNRVT ASGYWKATGA DRMIRAENSR  120
SIGLKKTLVF YSGKAPKGIR TSWIMNEYRL PQNETDHYQK AEISLCRVYK RAGVDDHNHL  180
SSHTSTKPTS SRANGLDKKF SSSCHLPASF ETFRGDSSSS TAIEKARKVH ISGNNNTNLP  240
TPIYKPTTLY GSTSASVASL SSTTSTEEDG STSLYGHSKN TNSLVSTYSL INLTSPSMAS  300
TPIDELNRLV GYNQTYNNQL LNNQLLPLQQ QQAQMLPLNS MSMSLSSISD KLWEWNALPH  360
DAARDLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-552617119165NO APICAL MERISTEM PROTEIN
1ut4_B1e-552617119165NO APICAL MERISTEM PROTEIN
1ut7_A1e-552617119165NO APICAL MERISTEM PROTEIN
1ut7_B1e-552617119165NO APICAL MERISTEM PROTEIN
4dul_A1e-552617119165NAC domain-containing protein 19
4dul_B1e-552617119165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020083042.10.0NAC domain-containing protein 35
RefseqXP_020083112.10.0NAC domain-containing protein 35
TrEMBLA0A199VAA00.0A0A199VAA0_ANACO; Putative NAC domain-containing protein 94
STRINGXP_008804076.11e-173(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77063650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-105NAC domain containing protein 35