PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco009226.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C3H
Protein Properties Length: 687aa    MW: 75847.6 Da    PI: 6.4263
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco009226.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.21.2e-07131153427
                  ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  ++C +f++ G C  Gd+C+F+Hgp
  Aco009226.1 131 VPCYYFQK-GNCLKGDKCPFMHGP 153
                  79******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.5443564IPR000571Zinc finger, CCCH-type
SMARTSM003560.00223663IPR000571Zinc finger, CCCH-type
PfamPF156631.2E-113690No hitNo description
PROSITE profilePS5010311.2826692IPR000571Zinc finger, CCCH-type
SMARTSM003560.26891IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.248127154IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6127153IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6128152IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-5130153IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-5131153IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MDSGGGGGGG GRGGGGGGGG AKEGARPSTV EEEAQKRSTD CVYFLASPLT CKKGSECEYR  60
HSEGARVNPR DCWYWLNGTC LNPKCSFRHP PLSLFGATVA SVPAQPPATQ ASKPAQIPAP  120
VPAYNMTKQS VPCYYFQKGN CLKGDKCPFM HGPQSAGAPL PEKATKVSNS HIQPPQTKNK  180
DSWTMKDCKQ KNRPNFQKTP PSASAANTII SAPKPLAVPS TSAKPVTKVH SAPSNVLPLK  240
KTAVDGHPRF NQIHLPVEGG SVQNWMQKYE VKPIDDWLQN GSRHADEVLR ESSPGFDVLV  300
DNDDEDPEYL HNQDDFGRIS SGRYLDALDN YEDRHTDDDR VLASFERDRY HGRGEPDWLG  360
EVQNGYGLEQ RLRSLAERIS DRPGGLLQQE GESDLREKLL KRRRLNGLRS TINPDSWSEK  420
PYSRDDNYVG EKQHSSISNR LSGRIRFPGG SSPNRVNLRR EKEEVRGLRG RLSPVKATEI  480
HTRHEERRRR KSNEDFPTGL RSFVGRISRS RDVVPSSLDF AGPKSLTELK GSKVTETKPA  540
KVESEVSLSF EGPKPLSAIL KRKRGAHSGD NLQTSNKKED SDRDVEVGLR SITSTVEENG  600
NNIVSKFEKD NARLNEGDEE EAKGVVAAAG EDFVYDNQEL DHENARDGEP DYGFEAAEEE  660
ENAYQEDDDG LDDDDDFTKK VNGMFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1917GGRGGGGGG
2400404KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020113057.10.0zinc finger CCCH domain-containing protein 32-like
TrEMBLA0A199VF400.0A0A199VF40_ANACO; Zinc finger CCCH domain-containing protein 32
STRINGXP_008804174.11e-160(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66043241