PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco007067.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

G2-like

Protein Properties

Length: 385aa MW: 42772.4 Da PI: 7.1093

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco007067.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.2	1.6e-32	69	122	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +Fv+ave+LGG+++AtPk +l+lm+vkgL+++hvkSHLQ+YR+ Aco007067.1 69 PRLRWTPELHLCFVHAVERLGGQDRATPKLVLQLMNVKGLSIAHVKSHLQMYRS 122 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.0E-31	65	123	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.448	65	125	IPR017930	Myb domain
SuperFamily	SSF46689	4.84E-16	66	123	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-23	68	124	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-9	70	121	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MESTSLSEGS RKKPSDKDED AEEEAEDEEG EEENCLQNGG GSSSNSTVEE SDRKNELRSV 60 RQYVRSKNPR LRWTPELHLC FVHAVERLGG QDRATPKLVL QLMNVKGLSI AHVKSHLQMY 120 RSKKIDDSGH LITGSGNVVQ GGERHMYNLS PLHGFHHRPS AISRFDGPSL GGHGYWMHNK 180 LLGNSMSTAI VSKPYTSASE MIFGEGGRAR SNPEFYSNVL SLSDGVLLDR KFHEDGHNKS 240 QLFHEYKVGS SYQVGPSHRA TFFSQSQDRG EQLSFHYNTS ADENKSTKQA MFSRKGSLAC 300 ADDDNQGPDL NLSLSVGPRK DKRPRTWELD EVVDSNLSLS LFSPTKQERC MMKGNKTSKL 360 SMSEKGKEGT REDARGTSTL DLTI*

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MESTSLSEGS RKKPSDKDED AEEEAEDEEG EEENCLQNGG GSSSNSTVEE SDRKNELRSV  60
RQYVRSKNPR LRWTPELHLC FVHAVERLGG QDRATPKLVL QLMNVKGLSI AHVKSHLQMY  120
RSKKIDDSGH LITGSGNVVQ GGERHMYNLS PLHGFHHRPS AISRFDGPSL GGHGYWMHNK  180
LLGNSMSTAI VSKPYTSASE MIFGEGGRAR SNPEFYSNVL SLSDGVLLDR KFHEDGHNKS  240
QLFHEYKVGS SYQVGPSHRA TFFSQSQDRG EQLSFHYNTS ADENKSTKQA MFSRKGSLAC  300
ADDDNQGPDL NLSLSVGPRK DKRPRTWELD EVVDSNLSLS LFSPTKQERC MMKGNKTSKL  360
SMSEKGKEGT REDARGTSTL DLTI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-17	70	124	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	70	124	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	70	124	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	70	124	3	57	Protein PHOSPHATE STARVATION RESPONSE 1

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00297	DAP	Transfer from AT2G38300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020113720.1	0.0	two-component response regulator ARR2
TrEMBL	A0A199W2E6	1e-121	A0A199W2E6_ANACO; Putative Myb family transcription factor

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4408	36	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	6e-45	G2-like family protein

Link Out ? help Back to Top
Phytozome	Aco007067.1