PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco006100.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C3H
Protein Properties Length: 572aa    MW: 61713.8 Da    PI: 7.9724
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco006100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.62.7e-10198222226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  +++ C +++ t tCk+G+ CkF H+
  Aco006100.1 198 GEKDCAHYMLTRTCKFGEACKFDHP 222
                  7889********************8 PP
2zf-CCCH37.25e-12249275127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++ C+++++t  Ck+G+rCkF+H++
  Aco006100.1 249 PGEPDCPYYMKTQKCKFGSRCKFNHPK 275
                  5789*********************96 PP
3zf-CCCH39.87.7e-13296320327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++lC f+a+tG Ck+G++CkF+H++
  Aco006100.1 296 EPLCTFYAKTGKCKFGANCKFHHPK 320
                  79*********************96 PP
4zf-CCCH38.51.9e-12375399226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ++  C+f+++tG CkyG++C+++H+
  Aco006100.1 375 GETDCPFYMKTGSCKYGATCRYNHP 399
                  6789********************9 PP
5zf-CCCH37.73.5e-12472497126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +++++C+++++tG+Ck+ drC+F+H+
  Aco006100.1 472 PGEVECDYYMKTGQCKFADRCRFHHP 497
                  5789*********************8 PP
6zf-CCCH36.21e-11528550527
                  --SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                   C+f+++tG Ck+G++C+F H+p
  Aco006100.1 528 ACSFYMKTGMCKFGSNCRFDHPP 550
                  6********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.962196224IPR000571Zinc finger, CCCH-type
SMARTSM003560.0054196223IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-8198222IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.103248276IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5248275IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9250275IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5253276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-5254275IPR000571Zinc finger, CCCH-type
SMARTSM003568.0E-7293320IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.521293321IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6296321IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-10296320IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-6298319IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-7373400IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.281373401IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-10375399IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5376400IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4379398IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.418471499IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-7471498IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6473500IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-9473497IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-5477497IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-7523550IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.488523551IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6527550IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-8528550IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-5529548IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MLLNLRKYTT TQIAFVLSLL PHRAGHAFPS PIQLPNPNPS RALSSSSMSN QFYNYGSSSY  60
DGSAASSLYS IRSAANPYLP DAVSSRLASA DPFSAAAAAA AAAADTAMYS SYDLGADQLY  120
ARYSKPTDAY RYSAAAKTPA GSADAAVSGA RRSVEALYHQ SILGSHSTIG QSQALYSTNL  180
VKRPRFESNL PIYPQRPGEK DCAHYMLTRT CKFGEACKFD HPIWVPDGGI PDWKEVPLVP  240
NVETLPERPG EPDCPYYMKT QKCKFGSRCK FNHPKEMNGE GTEISDVSVL PERPSEPLCT  300
FYAKTGKCKF GANCKFHHPK DIQIPLSGED AGATVKAEAA EIDGLAGGDS MLTTTHVTIT  360
PALFHNSKGL PIRPGETDCP FYMKTGSCKY GATCRYNHPD RYGGPPILFG WFIYAAITPP  420
LAAAVGQTVL HPTATNLPFG VLNPTANLFQ SFNLQPTHAS LAIAPTVYPQ RPGEVECDYY  480
MKTGQCKFAD RCRFHHPIDR AAPVSDAKQT LNVKLTLAGL PRREGATACS FYMKTGMCKF  540
GSNCRFDHPP PGEAVAMAAM QGSGDGEEGE N*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020105980.10.0zinc finger CCCH domain-containing protein 8
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A199W1I70.0A0A199W1I7_ANACO; Zinc finger CCCH domain-containing protein 8
STRINGXP_008791420.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-180floral homeotic protein (HUA1)