PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco005761.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MYB_related | ||||||||
Protein Properties | Length: 288aa MW: 31978.2 Da PI: 6.9621 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55 | 1.9e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l +++ +G g+W++++r g+ R++k+c++rw +yl Aco005761.1 14 RGLWSPEEDEKLRKYISTYGHGCWSSVPRLAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-26 | 6 | 71 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.808 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.22E-23 | 14 | 100 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.94E-12 | 17 | 61 | No hit | No description |
SMART | SM00717 | 7.3 | 66 | 101 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-8 | 79 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.786 | 79 | 99 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MGHHSCCNKQ KVRRGLWSPE EDEKLRKYIS TYGHGCWSSV PRLAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SHQEETLIIA KHLPGRTDNE VKNFWNSTIK KKLISHAVDG LNLIPSPDSY 120 YIPDGVATTR GYDGQCMAGY AVETTIAPSI TRAHLYGSLW PSNPQQFNLL DCDRQNVKDY 180 STLNFCSENT INTLLTETKC ADVKLVDGYD QPIEIEKCTV PLLSASNEID PNAHVSAYFR 240 AQPCVSDLLQ ESIGPGDFFD VILGSSSLAV SGDGLSMNPG IQPHWVP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-19 | 14 | 103 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020080624.1 | 0.0 | myb-related protein 330-like isoform X1 | ||||
Refseq | XP_020098119.1 | 0.0 | myb-related protein 330-like isoform X2 | ||||
TrEMBL | A0A199VPE2 | 1e-141 | A0A199VPE2_ANACO; Transcription factor MYB26 | ||||
STRING | XP_008775155.1 | 5e-93 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12813 | 30 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13890.2 | 3e-62 | myb domain protein 26 |
Link Out ? help Back to Top | |
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Phytozome | Aco005761.1 |